MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1235.2 nTPM
HPA Brain:314.7 nTPM
GTEx:1235.2 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:76.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 314.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 285.9
2666 Male, age 74, left hemisphere 349.4
2411 Female, age 72, unknown 340.6
2586 Male, age 75, left hemisphere 311.6
1870 Female, age 42, unknown 293.5
2828 Female, age 72, unknown 290.6
1827 Male, age 72, unknown 283.2
2019 Male, age 18, unknown 276.5
1830 Male, age 51, unknown 252.2
1833 Male, age 53, unknown 247.5
2219 Male, age 76, both hemispheres 214.2
Dorsal raphe nucleus
nTPM: 274.0
2016 Female, age 72, unknown 307.6
2298 Female, age 72, unknown 295.1
1828 Male, age 53, unknown 266.2
2047 Male, age 72, unknown 251.5
2750 Male, age 76, both hemispheres 249.5
Inferior colliculus
nTPM: 243.1
1890 Male, age 53, unknown 274.7
2097 Female, age 72, unknown 257.8
1848 Female, age 42, unknown 223.0
2849 Male, age 72, unknown 216.7
Median raphe nucleus
nTPM: 211.7
2220 Male, age 76, midline 211.7
Periaquaductal grey, anterior
nTPM: 280.5
2502 Female, age 75, unknown 319.3
1947 Male, age 18, unknown 267.9
1795 Male, age 51, unknown 254.2
Periaquaductal grey, dorsal
nTPM: 251.0
1840 Male, age 53, unknown 284.7
1831 Male, age 72, unknown 248.1
2464 Female, age 72, unknown 241.8
2850 Male, age 76, both hemispheres 229.3
Periaquaductal grey, lateral
nTPM: 239.1
2053 Male, age 18, unknown 311.5
2140 Male, age 76, both hemispheres 224.8
2272 Male, age 74, both hemispheres 181.0
Pretectal area
nTPM: 257.0
2316 Male, age 76, right hemisphere 291.8
1815 Male, age 53, unknown 284.8
1816 Male, age 51, unknown 284.1
2007 Male, age 72, unknown 274.8
2825 Male, age 18, unknown 266.6
1817 Female, age 42, unknown 262.2
2407 Male, age 75, both hemispheres 251.8
2224 Female, age 72, unknown 245.1
1944 Female, age 72, unknown 226.8
2667 Female, age 75, unknown 223.2
2273 Male, age 74, both hemispheres 215.9
Red nucleus
nTPM: 291.0
2503 Female, age 72, unknown 369.4
1821 Female, age 72, unknown 335.6
2588 Male, age 74, left hemisphere 325.3
2584 Male, age 75, left hemisphere 316.7
2725 Female, age 75, unknown 300.1
1865 Male, age 51, unknown 289.9
1904 Male, age 53, unknown 278.4
2769 Male, age 72, unknown 266.0
2227 Male, age 72, unknown 258.7
1954 Female, age 42, unknown 258.4
2785 Male, age 18, unknown 254.0
2823 Male, age 76, right hemisphere 239.5
Substantia nigra
nTPM: 314.7
2241 Male, age 72, unknown 380.4
2409 Female, age 72, unknown 365.0
2665 Male, age 74, both hemispheres 357.0
1851 Male, age 51, unknown 352.0
2699 Male, age 18, unknown 308.2
1916 Female, age 42, unknown 306.4
2590 Female, age 75, unknown 291.2
1941 Male, age 53, unknown 265.6
2583 Male, age 75, right hemisphere 261.7
1889 Female, age 72, unknown 259.8
Superior colliculus
nTPM: 275.5
2587 Male, age 74, left hemisphere 360.4
1995 Male, age 72, unknown 307.9
1913 Female, age 42, unknown 287.2
2664 Male, age 75, both hemispheres 286.7
2668 Female, age 75, unknown 281.6
1796 Male, age 53, unknown 268.9
1839 Male, age 51, unknown 266.7
2261 Male, age 18, unknown 240.4
2087 Female, age 72, unknown 230.5
1895 Male, age 76, right hemisphere 224.9
Ventral tegmental area
nTPM: 286.5
2410 Female, age 72, unknown 339.5
1915 Female, age 42, unknown 328.2
2021 Male, age 53, unknown 285.4
1942 Male, age 51, unknown 283.7
2223 Female, age 72, unknown 269.0
2218 Male, age 76, both hemispheres 213.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1235.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1235.2
Samples: 183

Max nTPM: 3009.9
Min nTPM: 443.4
Std nTPM: 420.2
Median nTPM: 1134.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3009.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2719.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2469.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2363.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2119.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2118.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 2108.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2007.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2000.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1959.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1959.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 76.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.1
Samples: 4

Max nTPM: 107.3
Min nTPM: 57.4
Sample A Female 107.3
Sample B Female 80.4
Sample C Male 57.4
Sample D Male 59.2
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 99.4
Min nTPM: 53.6
Sample A Female 99.4
Sample B Female 79.9
Sample C Male 55.7
Sample D Male 53.6
Periaqueductal gray
nTPM: 57.9
Samples: 3

Max nTPM: 61.3
Min nTPM: 55.9
Sample B Female 61.3
Sample C Male 56.5
Sample D Male 55.9
Superior colliculi
nTPM: 75.5
Samples: 4

Max nTPM: 91.7
Min nTPM: 60.7
Sample A Female 91.7
Sample B Female 83.6
Sample C Male 66.1
Sample D Male 60.7

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