On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1215.5
nTPM
HPA Brain:
435.7
nTPM
GTEx:
1215.5
nTPM
FANTOM5:
20.0
Scaled Tags Per Million
Macaque:
34.3
nTPM
Pig:
90.5
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
2273945
Sample
Intensity
Spinal cord_01
3146233
Spinal cord_02
3071688
Spinal cord_03
1815164
Spinal cord_04
2238734
Spinal cord_05
1006806
Spinal cord_06
2582400
Spinal cord_07
2309156
Spinal cord_08
1980816
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
435.7
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 353.6
2818
Female, age 79, both hemispheres
370.7
2819
Male, age 47, both hemispheres
357.3
2193
Male, age 75, both hemispheres
347.9
2734
Male, age 80, both hemispheres
338.7
Cervical spinal cord, central gray nTPM: 325.5
2048
Male, age 55, midline
372.1
2565
Male, age 75, midline
371.0
1981
Female, age 72, midline
368.0
2816
Male, age 47, midline
263.7
2194
Female, age 79, both hemispheres
252.9
Cervical spinal cord, dorsal horn nTPM: 317.7
2173
Female, age 72, unknown
425.0
2069
Male, age 47, both hemispheres
387.2
2296
Male, age 66, both hemispheres
340.1
1877
Male, age 55, unknown
325.8
2297
Male, age 75, both hemispheres
222.5
2721
Male, age 90, both hemispheres
205.7
Cervical spinal cord, ventral horn nTPM: 435.7
2480
Male, age 75, both hemispheres
663.7
2809
Male, age 90, both hemispheres
564.5
2098
Female, age 72, unknown
461.0
2295
Male, age 66, both hemispheres
375.6
2068
Male, age 55, unknown
338.4
2820
Female, age 79, both hemispheres
210.9
Dorsal funiculus (white matter) nTPM: 350.9
2810
Male, age 90, both hemispheres
377.6
2812
Male, age 66, both hemispheres
371.3
2064
Female, age 79, both hemispheres
345.6
2817
Male, age 47, both hemispheres
333.8
2128
Male, age 75, both hemispheres
326.1
Lateral funiculus (white matter) nTPM: 351.7
2094
Female, age 79, both hemispheres
401.1
2099
Male, age 90, both hemispheres
350.6
2192
Male, age 75, both hemispheres
330.7
2294
Male, age 66, both hemispheres
324.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1215.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1215.5
Samples: 204
Max nTPM: 2771.2
Min nTPM: 473.6
Std nTPM: 398.8
Median nTPM: 1136.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
2771.2
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
2439.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
2419.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
2276.8
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
2132.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
2054.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
2032.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
2023.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1980.6
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1945.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1943.5
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1939.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1932.4
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1909.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1889.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
1829.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1825.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1814.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1814.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1801.5
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1791.9
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1788.1
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1766.5
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1764.3
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1738.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1728.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1720.5
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1716.8
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1708.1
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1689.5
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1660.9
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1654.5
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1641.0
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1638.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1628.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1607.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1604.4
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1594.6
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1574.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1551.7
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1548.1
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
1541.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
1537.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1529.4
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1529.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1523.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1515.5
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
1506.0
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1498.0
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1493.0
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1490.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1484.1
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1469.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1449.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1431.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1430.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1392.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1387.6
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1368.8
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1360.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1358.6
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1354.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
1343.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1341.2
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1338.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1337.0
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1334.1
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1294.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1289.9
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1278.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
1276.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1261.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1253.4
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
1251.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1241.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1240.7
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1236.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1225.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1221.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1219.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1210.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1208.8
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1207.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1204.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
1202.8
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1201.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1198.8
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1196.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1196.1
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1180.4
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1177.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1177.0
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1168.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1162.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1153.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1146.9
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1146.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1142.0
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1141.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
1139.0
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1138.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1138.0
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1134.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
1131.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1112.0
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1111.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1106.6
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1099.2
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
1098.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1094.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1086.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1079.1
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1078.4
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1078.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1077.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1077.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1068.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
1064.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1054.3
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
1052.2
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1046.4
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1044.4
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1040.8
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
1040.0
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1039.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1022.3
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1016.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
1008.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
1006.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1006.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1004.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1002.1
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1002.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1000.6
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1000.1
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
989.8
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
987.4
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
986.4
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
980.5
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
980.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
973.6
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
973.5
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
969.8
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
963.7
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
963.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
959.8
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
953.7
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
945.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
942.7
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
935.2
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
932.4
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
926.0
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
924.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
922.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
921.0
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
919.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
918.9
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
917.0
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
916.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
911.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
886.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
877.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
877.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
864.7
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
862.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
859.5
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
858.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
857.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
853.3
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
849.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
849.0
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
838.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
837.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
836.3
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
835.5
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
815.1
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
812.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
812.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
810.7
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
799.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
793.4
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
792.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
792.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
785.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
777.9
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
776.6
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
775.9
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
766.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
766.3
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
763.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
752.3
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
745.7
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
745.4
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
742.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
701.7
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
693.1
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
684.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
677.4
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
641.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
638.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
636.4
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
624.4
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
550.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
473.6
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.3
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 28.4
Samples: 2
Max nTPM: 34.9
Min nTPM: 21.9
Sample A
21.9
Sample B
34.9
Ventral spinal cord nTPM: 34.3
Samples: 1
Max nTPM: 34.3
Min nTPM: 34.3
Sample A
34.3
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.5
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 90.4
Samples: 4
Max nTPM: 131.6
Min nTPM: 59.9
Sample A
Female
72.1
Sample B
Female
98.2
Sample C
Male
131.6
Sample D
Male
59.9
Ventral spinal cord nTPM: 78.7
Samples: 4
Max nTPM: 87.8
Min nTPM: 66.8
Sample A
Female
66.8
Sample B
Female
82.6
Sample C
Male
87.8
Sample D
Male
77.4
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The Human Protein Atlas project is funded
