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RPS27A
HPA
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  • RPS27A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1215.5 nTPM
HPA Brain:434.4 nTPM
GTEx:1215.5 nTPM
FANTOM5:20.0 Scaled Tags Per Million
Pig:90.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 324.6
2048 Male, age 55, midline 370.7
2565 Male, age 75, midline 370.3
1981 Female, age 72, midline 366.7
2816 Male, age 47, midline 262.9
2194 Female, age 79, both hemispheres 252.1
Cervical spinal cord, dorsal horn
nTPM: 316.8
2173 Female, age 72, unknown 423.5
2069 Male, age 47, both hemispheres 386.0
2296 Male, age 66, both hemispheres 339.3
1877 Male, age 55, unknown 324.8
2297 Male, age 75, both hemispheres 222.0
2721 Male, age 90, both hemispheres 205.1
Cervical spinal cord, ventral horn
nTPM: 434.4
2480 Male, age 75, both hemispheres 662.1
2809 Male, age 90, both hemispheres 562.7
2098 Female, age 72, unknown 459.2
2295 Male, age 66, both hemispheres 374.5
2068 Male, age 55, unknown 337.4
2820 Female, age 79, both hemispheres 210.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1215.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1215.5
Samples: 204

Max nTPM: 2771.2
Min nTPM: 473.6
Std nTPM: 398.8
Median nTPM: 1136.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2771.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2439.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2419.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 2276.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2132.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 2054.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2032.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2023.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1980.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1945.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1943.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1939.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1932.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1909.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1889.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1829.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1825.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1814.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1814.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1801.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1791.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1788.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1766.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1764.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1738.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1728.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1720.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1716.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1708.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1689.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1660.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1654.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1641.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1638.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1628.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1607.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1604.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1594.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1574.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1551.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1548.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1541.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1537.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1529.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1529.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1523.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1515.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1506.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1498.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1493.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1490.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1484.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1469.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1449.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1431.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1430.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1392.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1387.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1368.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1360.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1358.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1354.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1343.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1341.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1338.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1337.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1334.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1294.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1289.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1278.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1276.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1261.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1253.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1251.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1241.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1240.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1236.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1225.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1221.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1219.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1210.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1208.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1207.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1204.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1202.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1201.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1198.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1196.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1196.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1180.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1177.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1177.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1168.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1162.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1153.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1146.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1146.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1142.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1141.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1139.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1138.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1138.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1134.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1131.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1112.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1111.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1106.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1099.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1098.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1094.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1086.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1079.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1078.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1078.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1077.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1077.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1068.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1064.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1054.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1052.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1046.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1044.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1040.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1040.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1039.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1022.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1016.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1008.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1006.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1006.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1004.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1002.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1002.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1000.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1000.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 989.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 987.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 986.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 980.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 980.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 973.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 973.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 969.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 963.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 963.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 959.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 953.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 945.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 942.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 935.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 932.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 926.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 924.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 922.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 921.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 919.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 918.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 917.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 916.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 911.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 886.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 877.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 877.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 864.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 862.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 859.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 858.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 857.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 853.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 849.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 849.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 838.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 837.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 836.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 835.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 815.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 812.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 812.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 810.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 799.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 793.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 792.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 792.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 785.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 777.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 776.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 775.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 766.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 766.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 763.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 752.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 745.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 745.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 742.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 701.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 693.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 684.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 677.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 641.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 638.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 636.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 624.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 550.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 473.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

20.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 20.0
FF:10181-103D1 60 years, female 26.9
FF:10159-103A6 76 years, female 13.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 90.1
Samples: 4

Max nTPM: 130.9
Min nTPM: 59.7
Sample A Female 71.9
Sample B Female 97.8
Sample C Male 130.9
Sample D Male 59.7
Ventral spinal cord
nTPM: 78.3
Samples: 4

Max nTPM: 87.4
Min nTPM: 66.6
Sample A Female 66.6
Sample B Female 82.1
Sample C Male 87.4
Sample D Male 77.1

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