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  • PMP2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:199.3 nTPM
HPA Brain:158.0 nTPM
GTEx:199.3 nTPM
FANTOM5:395.9 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.0
Sample id Sample description nTPM
Amygdala
nTPM: 158.0
2695 Female, age 67, right hemisphere 214.0
2814 Male, age 76, right hemisphere 197.2
1987 Female, age 91, left hemisphere 159.0
2514 Male, age 75, right hemisphere 128.0
2517 Female, age 94, left hemisphere 91.8
Basal amygdala
nTPM: 103.1
1955 Male, age 76, both hemispheres 183.1
2110 Male, age 80, left hemisphere 107.5
2609 Male, age 75, right hemisphere 97.4
2827 Female, age 67, right hemisphere 85.1
2243 Female, age 91, right hemisphere 74.7
2685 Female, age 94, left hemisphere 70.9
Central amygdala
nTPM: 139.4
2515 Male, age 75, right hemisphere 184.6
1905 Male, age 76, both hemispheres 182.3
2239 Male, age 80, left hemisphere 111.6
2826 Female, age 94, left hemisphere 110.0
2701 Female, age 91, right hemisphere 108.3
Corticomedial amygdala
nTPM: 109.3
2240 Male, age 76, both hemispheres 168.3
2428 Male, age 75, right hemisphere 119.3
2242 Female, age 91, right hemisphere 105.2
2829 Male, age 80, left hemisphere 99.4
2429 Female, age 94, left hemisphere 95.8
2535 Female, age 67, right hemisphere 67.5
Lateral amygdala
nTPM: 119.2
1883 Male, age 76, both hemispheres 197.3
2256 Male, age 80, left hemisphere 142.3
2830 Female, age 67, right hemisphere 107.7
2516 Male, age 75, right hemisphere 107.3
2534 Female, age 94, left hemisphere 84.9
2255 Female, age 91, right hemisphere 75.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 199.3
Samples: 181

Max nTPM: 654.9
Min nTPM: 45.7
Std nTPM: 77.5
Median nTPM: 190.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 654.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 519.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 393.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 368.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 351.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 347.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 338.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 335.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 330.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 327.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 318.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 317.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 311.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 307.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 305.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 303.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 302.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 295.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 293.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 291.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 288.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 286.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 283.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 281.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 281.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 280.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 279.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 272.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 266.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 266.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 265.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 264.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 263.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 261.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 259.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 256.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 254.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 254.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 254.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 241.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 240.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 238.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 237.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 236.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 236.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 234.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 232.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 229.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 228.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 228.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 227.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 226.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 222.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 222.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 222.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 222.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 219.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 219.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 219.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 218.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 216.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 215.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 215.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 213.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 213.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 209.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 209.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 209.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 208.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 207.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 206.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 205.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 204.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 203.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 203.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 200.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 199.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 199.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 198.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 198.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 198.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 197.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 196.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 195.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 194.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 193.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 193.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 193.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 193.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 191.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 190.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 189.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 189.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 188.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 184.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 184.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 183.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 182.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 180.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 178.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 178.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 176.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 175.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 175.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 174.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 173.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 169.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 168.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 168.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 167.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 165.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 164.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 163.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 162.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 162.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 161.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 161.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 160.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 160.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 159.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 159.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 158.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 156.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 155.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 155.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 154.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 154.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 154.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 152.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 152.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 151.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 149.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 149.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 148.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 147.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 146.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 146.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 145.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 143.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 142.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 140.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 140.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 139.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 139.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 139.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 138.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 137.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 137.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 136.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 135.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 133.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 132.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 130.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 128.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 124.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 124.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 123.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 122.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 119.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 118.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 118.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 116.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 115.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 112.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 107.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 107.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 105.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 103.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 100.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 96.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 95.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 89.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 67.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 56.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 45.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

395.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 395.9
FF:10151-102I7 76 years, female 395.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.1
Pig sample Sample description nTPM
Amygdala
nTPM: 1.2
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.5
Sample A Female 1.7
Sample B Female 0.5
Sample C Male 0.7
Sample D Male 1.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
70785780 Antisense, RP_050706_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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