On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
199.3
nTPM
HPA Brain:
139.6
nTPM
GTEx:
199.3
nTPM
FANTOM5:
395.9
Scaled Tags Per Million
Macaque:
14.5
nTPM
Mouse:
0.0
nTPM
Rat:
0.2
nTPM
Pig:
1.1
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - Annotated protein expression
Pending normal tissue analysis
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.6
Sample id
Sample description
nTPM
Basal amygdala nTPM: 103.5
1955
Male, age 76, both hemispheres
182.5
2110
Male, age 80, left hemisphere
107.9
2609
Male, age 75, right hemisphere
98.1
2827
Female, age 67, right hemisphere
86.7
2243
Female, age 91, right hemisphere
74.8
2685
Female, age 94, left hemisphere
70.7
Central amygdala nTPM: 139.6
2515
Male, age 75, right hemisphere
185.9
1905
Male, age 76, both hemispheres
181.7
2239
Male, age 80, left hemisphere
112.0
2826
Female, age 94, left hemisphere
109.6
2701
Female, age 91, right hemisphere
108.6
Corticomedial amygdala nTPM: 109.6
2240
Male, age 76, both hemispheres
167.9
2428
Male, age 75, right hemisphere
120.1
2242
Female, age 91, right hemisphere
105.4
2829
Male, age 80, left hemisphere
99.8
2429
Female, age 94, left hemisphere
95.4
2535
Female, age 67, right hemisphere
68.8
Lateral amygdala nTPM: 119.6
1883
Male, age 76, both hemispheres
196.7
2256
Male, age 80, left hemisphere
142.8
2830
Female, age 67, right hemisphere
109.6
2516
Male, age 75, right hemisphere
108.1
2534
Female, age 94, left hemisphere
84.5
2255
Female, age 91, right hemisphere
75.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
199.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 199.3
Samples: 181
Max nTPM: 654.9
Min nTPM: 45.7
Std nTPM: 77.5
Median nTPM: 190.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
654.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
519.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
393.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
368.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
351.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
347.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
338.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
335.8
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
330.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
327.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
318.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
317.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
311.4
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
307.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
305.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
303.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
302.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
295.9
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
293.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
291.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
288.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
286.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
283.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
281.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
281.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
280.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
279.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
272.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
266.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
266.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
265.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
264.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
263.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
261.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
259.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
256.5
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
254.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
254.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
254.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
241.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
240.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
238.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
237.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
236.9
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
236.2
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
234.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
232.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
229.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
228.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
228.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
227.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
226.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
222.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
222.7
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
222.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
222.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
219.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
219.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
219.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
218.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
216.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
215.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
215.9
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
213.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
213.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
209.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
209.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
209.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
208.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
207.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
206.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
205.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
204.5
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
203.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
203.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
200.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
199.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
199.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
198.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
198.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
198.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
197.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
196.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
195.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
194.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
193.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
193.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
193.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
193.0
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
191.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
190.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
189.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
189.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
188.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
184.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
184.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
183.3
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
182.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
180.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
178.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
178.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
176.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
175.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
175.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
174.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
173.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
169.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
168.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
168.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
167.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
167.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
165.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
164.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
163.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
162.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
162.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
161.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
161.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
160.7
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
160.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
159.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
159.7
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
158.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
156.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
155.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
155.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
154.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
154.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
154.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
152.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
152.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
151.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
149.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
149.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
148.9
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
147.2
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
146.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
146.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
145.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
143.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
142.6
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
140.8
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
140.7
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
139.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
139.7
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
139.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
138.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
137.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
137.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
136.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
135.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
135.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
133.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
132.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
130.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
128.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
126.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
124.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
124.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
123.7
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
122.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
119.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
119.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
118.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
118.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
116.3
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
115.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
112.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
110.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
107.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
107.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
105.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
103.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
100.5
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
96.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
95.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
89.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
81.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
67.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
56.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
45.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.5
Macaque sample
Sample description
nTPM
Amygdala nTPM: 14.5
Samples: 2
Max nTPM: 17.2
Min nTPM: 11.7
Sample A
11.7
Sample B
17.2
AMYGDALA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 1.2
Samples: 4
Max nTPM: 1.7
Min nTPM: 0.5
Sample A
Female
1.7
Sample B
Female
0.5
Sample C
Male
0.7
Sample D
Male
1.7
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 0.0
Samples: 4
Max nTPM: 0.1
Min nTPM: 0.0
Sample A
0.1
Sample B
0.0
Sample C
0.0
Sample D
0.0
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.2
Rat sample
Sample description
nTPM
Amygdala nTPM: 0.2
Samples: 4
Max nTPM: 0.3
Min nTPM: 0.1
Sample A
0.3
Sample A
0.2
Sample A
0.2
Sample A
0.1
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The Human Protein Atlas project is funded
