MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:289.6 nTPM
HPA Brain:346.5 nTPM
GTEx:289.6 nTPM
FANTOM5:674.7 Scaled Tags Per Million
Pig:138.9 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 346.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 222.4
1870 Female, age 42, unknown 278.8
2828 Female, age 72, unknown 265.5
2586 Male, age 75, left hemisphere 244.4
2666 Male, age 74, left hemisphere 232.0
1833 Male, age 53, unknown 225.1
2019 Male, age 18, unknown 218.2
2411 Female, age 72, unknown 208.6
1830 Male, age 51, unknown 206.4
1827 Male, age 72, unknown 199.5
2219 Male, age 76, both hemispheres 145.8
Dorsal raphe nucleus
nTPM: 303.1
2016 Female, age 72, unknown 403.5
1828 Male, age 53, unknown 339.5
2047 Male, age 72, unknown 283.7
2298 Female, age 72, unknown 271.9
2750 Male, age 76, both hemispheres 217.1
Inferior colliculus
nTPM: 330.0
1848 Female, age 42, unknown 376.2
2849 Male, age 72, unknown 346.3
2097 Female, age 72, unknown 338.2
1890 Male, age 53, unknown 259.3
Median raphe nucleus
nTPM: 201.8
2220 Male, age 76, midline 201.8
Periaquaductal grey, anterior
nTPM: 219.9
2502 Female, age 75, unknown 248.4
1795 Male, age 51, unknown 210.7
1947 Male, age 18, unknown 200.6
Periaquaductal grey, dorsal
nTPM: 346.5
2850 Male, age 76, both hemispheres 403.6
1840 Male, age 53, unknown 393.6
2464 Female, age 72, unknown 316.0
1831 Male, age 72, unknown 272.9
Periaquaductal grey, lateral
nTPM: 268.6
2140 Male, age 76, both hemispheres 338.0
2053 Male, age 18, unknown 287.2
2272 Male, age 74, both hemispheres 180.6
Pretectal area
nTPM: 217.5
2224 Female, age 72, unknown 279.9
1817 Female, age 42, unknown 261.0
2825 Male, age 18, unknown 231.5
2316 Male, age 76, right hemisphere 228.4
2407 Male, age 75, both hemispheres 221.9
1815 Male, age 53, unknown 221.8
1944 Female, age 72, unknown 210.3
2273 Male, age 74, both hemispheres 204.9
2667 Female, age 75, unknown 190.5
1816 Male, age 51, unknown 185.1
2007 Male, age 72, unknown 156.8
Red nucleus
nTPM: 288.5
1954 Female, age 42, unknown 403.1
2227 Male, age 72, unknown 350.2
2769 Male, age 72, unknown 343.5
2503 Female, age 72, unknown 326.1
1865 Male, age 51, unknown 324.4
1821 Female, age 72, unknown 316.4
1904 Male, age 53, unknown 294.9
2823 Male, age 76, right hemisphere 280.0
2725 Female, age 75, unknown 235.9
2588 Male, age 74, left hemisphere 212.8
2785 Male, age 18, unknown 208.2
2584 Male, age 75, left hemisphere 166.4
Substantia nigra
nTPM: 219.8
2699 Male, age 18, unknown 366.1
1889 Female, age 72, unknown 252.9
2241 Male, age 72, unknown 212.8
1941 Male, age 53, unknown 209.4
1916 Female, age 42, unknown 200.2
2583 Male, age 75, right hemisphere 197.8
1851 Male, age 51, unknown 196.2
2409 Female, age 72, unknown 194.2
2590 Female, age 75, unknown 190.6
2665 Male, age 74, both hemispheres 177.3
Superior colliculus
nTPM: 230.8
2668 Female, age 75, unknown 300.9
2664 Male, age 75, both hemispheres 294.5
1995 Male, age 72, unknown 277.5
2587 Male, age 74, left hemisphere 242.6
1839 Male, age 51, unknown 236.8
1913 Female, age 42, unknown 226.4
2087 Female, age 72, unknown 215.7
1796 Male, age 53, unknown 181.2
1895 Male, age 76, right hemisphere 168.0
2261 Male, age 18, unknown 164.4
Ventral tegmental area
nTPM: 254.6
2223 Female, age 72, unknown 314.8
1942 Male, age 51, unknown 290.0
2021 Male, age 53, unknown 275.2
1915 Female, age 42, unknown 251.0
2410 Female, age 72, unknown 207.5
2218 Male, age 76, both hemispheres 189.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 289.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 289.6
Samples: 183

Max nTPM: 861.8
Min nTPM: 40.9
Std nTPM: 136.1
Median nTPM: 265.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 861.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 691.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 678.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 675.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 607.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 594.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 575.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 568.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 556.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 541.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 541.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 674.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 674.7
FF:10158-103A5 76 years, female 674.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 138.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 138.9
Samples: 4

Max nTPM: 233.6
Min nTPM: 2.6
Sample A Female 199.6
Sample B Female 233.6
Sample C Male 119.7
Sample D Male 2.6
Midbrain
nTPM: 71.9
Samples: 4

Max nTPM: 279.0
Min nTPM: 0.4
Sample A Female 279.0
Sample B Female 7.2
Sample C Male 1.0
Sample D Male 0.4
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 19.4
Min nTPM: 3.9
Sample B Female 8.1
Sample C Male 3.9
Sample D Male 19.4
Superior colliculi
nTPM: 12.8
Samples: 4

Max nTPM: 38.2
Min nTPM: 1.1
Sample A Female 38.2
Sample B Female 10.5
Sample C Male 1.1
Sample D Male 1.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.3
Sample C Female 0.1
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70785780 Antisense, RP_050706_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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