On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
289.6
nTPM
HPA Brain:
346.9
nTPM
GTEx:
289.6
nTPM
FANTOM5:
674.7
Scaled Tags Per Million
Macaque:
39.3
nTPM
Mouse:
0.0
nTPM
Rat:
0.7
nTPM
Pig:
185.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
346.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 223.0
1870
Female, age 42, unknown
279.4
2828
Female, age 72, unknown
266.2
2586
Male, age 75, left hemisphere
246.1
2666
Male, age 74, left hemisphere
232.8
1833
Male, age 53, unknown
225.6
2019
Male, age 18, unknown
218.7
2411
Female, age 72, unknown
209.2
1830
Male, age 51, unknown
206.9
1827
Male, age 72, unknown
200.0
2219
Male, age 76, both hemispheres
145.4
Dorsal raphe nucleus nTPM: 303.7
2016
Female, age 72, unknown
404.8
1828
Male, age 53, unknown
340.3
2047
Male, age 72, unknown
284.3
2298
Female, age 72, unknown
272.8
2750
Male, age 76, both hemispheres
216.4
Inferior colliculus nTPM: 330.9
1848
Female, age 42, unknown
377.3
2849
Male, age 72, unknown
347.2
2097
Female, age 72, unknown
339.2
1890
Male, age 53, unknown
259.9
Median raphe nucleus nTPM: 201.2
2220
Male, age 76, midline
201.2
Periaquaductal grey, anterior nTPM: 220.4
2502
Female, age 75, unknown
249.1
1795
Male, age 51, unknown
211.3
1947
Male, age 18, unknown
201.0
Periaquaductal grey, dorsal nTPM: 346.9
2850
Male, age 76, both hemispheres
402.5
1840
Male, age 53, unknown
394.4
2464
Female, age 72, unknown
316.9
1831
Male, age 72, unknown
273.6
Periaquaductal grey, lateral nTPM: 268.8
2140
Male, age 76, both hemispheres
337.1
2053
Male, age 18, unknown
287.9
2272
Male, age 74, both hemispheres
181.3
Pretectal area nTPM: 218.0
2224
Female, age 72, unknown
280.8
1817
Female, age 42, unknown
261.7
2825
Male, age 18, unknown
232.0
2316
Male, age 76, right hemisphere
227.7
2407
Male, age 75, both hemispheres
223.6
1815
Male, age 53, unknown
222.2
1944
Female, age 72, unknown
210.8
2273
Male, age 74, both hemispheres
205.7
2667
Female, age 75, unknown
191.0
1816
Male, age 51, unknown
185.4
2007
Male, age 72, unknown
157.3
Red nucleus nTPM: 289.2
1954
Female, age 42, unknown
404.3
2227
Male, age 72, unknown
350.9
2769
Male, age 72, unknown
344.4
2503
Female, age 72, unknown
326.9
1865
Male, age 51, unknown
325.3
1821
Female, age 72, unknown
317.2
1904
Male, age 53, unknown
295.8
2823
Male, age 76, right hemisphere
279.2
2725
Female, age 75, unknown
236.6
2588
Male, age 74, left hemisphere
213.4
2785
Male, age 18, unknown
208.8
2584
Male, age 75, left hemisphere
167.6
Substantia nigra nTPM: 220.4
2699
Male, age 18, unknown
367.1
1889
Female, age 72, unknown
253.7
2241
Male, age 72, unknown
213.2
1941
Male, age 53, unknown
209.8
1916
Female, age 42, unknown
200.9
2583
Male, age 75, right hemisphere
199.1
1851
Male, age 51, unknown
196.7
2409
Female, age 72, unknown
194.7
2590
Female, age 75, unknown
191.0
2665
Male, age 74, both hemispheres
177.9
Superior colliculus nTPM: 231.5
2668
Female, age 75, unknown
301.7
2664
Male, age 75, both hemispheres
296.7
1995
Male, age 72, unknown
278.1
2587
Male, age 74, left hemisphere
243.4
1839
Male, age 51, unknown
237.4
1913
Female, age 42, unknown
227.2
2087
Female, age 72, unknown
216.2
1796
Male, age 53, unknown
181.7
1895
Male, age 76, right hemisphere
167.4
2261
Male, age 18, unknown
164.8
Ventral tegmental area nTPM: 255.1
2223
Female, age 72, unknown
315.6
1942
Male, age 51, unknown
290.8
2021
Male, age 53, unknown
275.8
1915
Female, age 42, unknown
251.7
2410
Female, age 72, unknown
208.2
2218
Male, age 76, both hemispheres
188.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
289.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 289.6
Samples: 183
Max nTPM: 861.8
Min nTPM: 40.9
Std nTPM: 136.1
Median nTPM: 265.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
861.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
691.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
678.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
675.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
607.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
594.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
575.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
568.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
556.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
541.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
541.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
529.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
523.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
512.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
509.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
509.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
507.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
498.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
479.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
467.4
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
465.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
459.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
456.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
445.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
438.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
436.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
434.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
430.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
427.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
420.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
418.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
414.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
413.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
401.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
391.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
388.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
382.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
378.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
375.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
374.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
371.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
369.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
368.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
359.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
355.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
355.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
354.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
345.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
344.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
341.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
341.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
340.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
338.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
336.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
335.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
331.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
327.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
326.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
324.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
322.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
321.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
319.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
319.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
318.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
318.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
314.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
314.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
312.6
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
309.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
306.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
303.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
302.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
302.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
301.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
299.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
297.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
294.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
293.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
291.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
289.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
284.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
284.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
283.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
281.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
280.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
279.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
279.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
276.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
271.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
269.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
266.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
265.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
262.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
262.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
261.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
260.7
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
259.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
255.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
253.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
248.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
247.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
241.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
238.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
237.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
237.1
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
233.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
233.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
232.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
231.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
228.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
228.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
227.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
224.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
224.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
222.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
222.1
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
221.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
221.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
219.5
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
219.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
219.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
218.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
217.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
216.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
216.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
216.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
215.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
214.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
213.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
209.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
202.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
200.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
199.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
198.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
197.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
195.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
193.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
191.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
190.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
188.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
186.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
186.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
181.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
179.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
175.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
175.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
175.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
174.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
168.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
167.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
166.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
166.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
166.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
164.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
164.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
163.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
162.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
159.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
159.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
152.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
149.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
149.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
149.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
149.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
146.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
145.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
143.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
142.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
141.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
136.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
128.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
126.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
114.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
114.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
112.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
112.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
111.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
95.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
84.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
83.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
76.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
53.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
40.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.3
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 39.3
Samples: 1
Max nTPM: 39.3
Min nTPM: 39.3
Sample A
39.3
Midbrain nTPM: 35.1
Samples: 1
Max nTPM: 35.1
Min nTPM: 35.1
Sample A
35.1
Superior colliculi nTPM: 23.5
Samples: 1
Max nTPM: 23.5
Min nTPM: 23.5
Sample A
23.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
185.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 185.2
Samples: 3
Max nTPM: 234.4
Min nTPM: 120.2
Sample A
Female
200.9
Sample B
Female
234.4
Sample C
Male
120.2
Midbrain nTPM: 2.9
Samples: 3
Max nTPM: 7.2
Min nTPM: 0.4
Sample B
Female
7.2
Sample C
Male
1.0
Sample D
Male
0.4
Periaqueductal gray nTPM: 10.5
Samples: 3
Max nTPM: 19.4
Min nTPM: 3.9
Sample B
Female
8.1
Sample C
Male
3.9
Sample D
Male
19.4
Superior colliculi nTPM: 12.8
Samples: 4
Max nTPM: 38.4
Min nTPM: 1.2
Sample A
Female
38.4
Sample B
Female
10.5
Sample C
Male
1.2
Sample D
Male
1.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
0.0
Sample B
0.0
Sample C
0.0
Sample D
0.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 0.7
Samples: 4
Max nTPM: 1.0
Min nTPM: 0.5
Sample A
0.5
Sample A
1.0
Sample A
0.6
Sample A
0.6
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The Human Protein Atlas project is funded
