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  • TISSUE

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  • PMP2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:388.6 nTPM
HPA Brain:356.8 nTPM
GTEx:388.6 nTPM
FANTOM5:1898.1 Scaled Tags Per Million
Pig:1781.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

356.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 356.8
2048 Male, age 55, midline 640.2
1981 Female, age 72, midline 408.8
2194 Female, age 79, both hemispheres 272.3
2816 Male, age 47, midline 271.3
2565 Male, age 75, midline 191.3
Cervical spinal cord, dorsal horn
nTPM: 308.3
2296 Male, age 66, both hemispheres 414.4
2173 Female, age 72, unknown 376.9
2069 Male, age 47, both hemispheres 370.9
1877 Male, age 55, unknown 320.1
2721 Male, age 90, both hemispheres 245.0
2297 Male, age 75, both hemispheres 122.4
Cervical spinal cord, ventral horn
nTPM: 345.6
2098 Female, age 72, unknown 683.6
2809 Male, age 90, both hemispheres 368.6
2295 Male, age 66, both hemispheres 332.9
2480 Male, age 75, both hemispheres 299.3
2068 Male, age 55, unknown 210.4
2820 Female, age 79, both hemispheres 178.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 388.6
Samples: 204

Max nTPM: 853.4
Min nTPM: 85.3
Std nTPM: 146.1
Median nTPM: 364.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 853.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 806.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 804.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 780.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 746.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 736.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 721.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 672.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 655.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 655.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 653.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 645.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 645.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 642.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 636.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 616.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 612.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 611.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 599.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 598.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 596.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 591.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 587.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 585.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 577.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 574.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 566.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 550.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 543.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 541.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 538.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 530.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 529.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 525.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 515.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 512.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 510.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 510.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 507.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 506.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 501.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 501.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 500.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 493.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 488.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 488.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 484.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 483.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 482.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 481.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 479.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 479.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 477.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 476.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 474.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 473.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 470.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 467.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 461.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 459.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 456.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 455.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 451.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 447.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 447.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 444.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 441.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 437.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 436.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 433.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 431.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 431.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 431.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 429.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 428.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 425.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 419.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 418.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 417.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 414.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 413.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 413.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 411.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 409.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 402.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 401.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 398.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 395.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 391.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 388.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 386.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 383.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 382.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 381.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 378.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 374.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 374.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 374.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 371.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 367.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 365.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 365.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 363.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 361.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 361.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 361.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 359.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 358.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 349.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 348.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 344.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 344.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 342.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 341.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 340.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 339.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 338.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 334.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 332.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 332.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 332.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 331.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 330.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 330.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 326.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 323.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 323.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 321.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 319.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 319.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 318.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 317.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 311.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 310.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 305.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 305.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 304.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 304.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 303.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 303.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 302.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 302.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 301.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 299.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 297.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 294.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 294.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 291.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 291.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 289.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 286.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 283.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 282.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 278.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 278.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 277.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 277.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 270.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 269.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 267.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 266.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 266.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 266.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 259.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 258.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 257.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 255.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 254.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 253.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 252.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 251.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 250.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 249.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 249.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 247.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 244.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 242.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 242.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 241.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 240.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 237.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 235.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 234.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 225.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 222.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 219.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 217.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 213.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 212.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 207.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 206.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 196.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 180.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 179.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 171.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 170.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 166.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 160.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 160.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 151.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 141.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 137.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 102.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 85.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1898.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1898.1
FF:10181-103D1 60 years, female 2067.1
FF:10159-103A6 76 years, female 1729.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1781.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1781.2
Samples: 4

Max nTPM: 2910.8
Min nTPM: 849.6
Sample A Female 849.6
Sample B Female 2364.8
Sample C Male 2910.8
Sample D Male 999.7
Ventral spinal cord
nTPM: 1400.5
Samples: 4

Max nTPM: 1724.5
Min nTPM: 1035.0
Sample A Female 1297.6
Sample B Female 1035.0
Sample C Male 1544.8
Sample D Male 1724.5

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