On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1166.7
nTPM
HPA Brain:
616.5
nTPM
GTEx:
1166.7
nTPM
FANTOM5:
3.4
Scaled Tags Per Million
Mouse:
191.8
nTPM
Rat:
13.9
nTPM
Pig:
727.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
74955
Sample
Intensity
Spinal cord_01
142606
Spinal cord_02
139642
Spinal cord_03
49406
Spinal cord_04
70726
Spinal cord_05
37789
Spinal cord_06
79184
Spinal cord_07
53319
Spinal cord_08
88750
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
616.5
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 525.2
2193
Male, age 75, both hemispheres
590.8
2819
Male, age 47, both hemispheres
527.6
2818
Female, age 79, both hemispheres
502.8
2734
Male, age 80, both hemispheres
479.5
Cervical spinal cord, central gray nTPM: 454.6
1981
Female, age 72, midline
555.5
2565
Male, age 75, midline
479.9
2048
Male, age 55, midline
463.6
2194
Female, age 79, both hemispheres
396.8
2816
Male, age 47, midline
377.3
Cervical spinal cord, dorsal horn nTPM: 460.4
2173
Female, age 72, unknown
626.5
2069
Male, age 47, both hemispheres
543.9
2296
Male, age 66, both hemispheres
541.7
1877
Male, age 55, unknown
449.2
2297
Male, age 75, both hemispheres
300.4
2721
Male, age 90, both hemispheres
300.4
Cervical spinal cord, ventral horn nTPM: 616.5
2480
Male, age 75, both hemispheres
844.8
2809
Male, age 90, both hemispheres
722.9
2098
Female, age 72, unknown
715.3
2295
Male, age 66, both hemispheres
576.3
2068
Male, age 55, unknown
499.0
2820
Female, age 79, both hemispheres
340.8
Dorsal funiculus (white matter) nTPM: 537.4
2810
Male, age 90, both hemispheres
590.9
2128
Male, age 75, both hemispheres
543.2
2064
Female, age 79, both hemispheres
528.5
2817
Male, age 47, both hemispheres
516.7
2812
Male, age 66, both hemispheres
507.5
Lateral funiculus (white matter) nTPM: 564.3
2094
Female, age 79, both hemispheres
630.5
2099
Male, age 90, both hemispheres
613.8
2192
Male, age 75, both hemispheres
515.7
2294
Male, age 66, both hemispheres
497.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1166.7
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1166.7
Samples: 204
Max nTPM: 2358.4
Min nTPM: 559.9
Std nTPM: 309.3
Median nTPM: 1131.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
2358.4
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
2135.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
2075.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1942.0
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1915.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1820.8
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1744.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1743.4
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1731.3
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1717.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1716.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1703.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1701.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1691.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1689.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1667.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1658.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1657.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1645.4
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1635.9
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1608.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1563.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1561.8
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
1537.2
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1535.9
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1534.9
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1534.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1525.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1486.3
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1484.4
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1484.1
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1480.4
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1473.8
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1469.7
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1443.1
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1441.1
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1434.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1432.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
1425.1
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
1419.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1412.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1400.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1399.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
1391.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1388.5
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1387.5
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1382.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1378.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1364.1
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1361.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1350.8
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1349.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1325.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1325.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
1321.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1298.6
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1298.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1294.5
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1294.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1289.2
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1287.9
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1287.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1286.1
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1283.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1277.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1275.1
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
1270.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1267.6
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1260.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1252.7
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1248.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1240.1
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1229.7
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1227.4
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1225.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1224.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1223.6
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
1218.6
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1214.0
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1211.8
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1207.0
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1206.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1206.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1202.9
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1199.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1188.5
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1180.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1177.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1176.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1172.6
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1161.0
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1160.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1156.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1154.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
1153.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1149.5
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1149.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1147.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1140.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1139.6
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1135.2
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1131.1
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1130.9
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1128.7
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1127.8
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
1127.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1125.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1123.5
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1123.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1110.1
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1095.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
1095.2
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1092.0
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1090.9
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1088.0
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1085.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1083.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1078.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1073.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1070.2
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1066.1
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1065.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
1059.6
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1053.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
1053.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1044.0
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
1041.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1040.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1036.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1030.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1027.1
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1025.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1024.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1024.3
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1020.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1015.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1014.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1008.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
1007.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1001.2
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1000.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
992.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
982.8
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
970.9
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
970.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
957.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
945.6
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
945.1
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
945.0
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
936.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
931.0
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
925.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
923.5
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
918.1
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
914.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
914.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
912.9
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
911.7
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
910.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
910.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
905.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
905.4
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
903.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
899.5
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
893.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
891.8
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
888.9
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
888.6
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
881.3
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
870.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
864.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
864.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
849.2
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
845.9
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
843.0
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
841.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
840.9
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
839.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
839.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
829.8
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
822.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
819.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
818.2
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
815.7
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
800.4
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
792.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
791.6
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
776.7
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
774.6
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
773.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
770.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
769.7
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
769.6
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
762.6
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
762.2
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
727.8
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
714.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
706.4
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
690.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
687.0
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
659.5
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
595.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
584.7
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
559.9
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
727.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 727.8
Samples: 4
Max nTPM: 1085.0
Min nTPM: 488.9
Sample A
Female
488.9
Sample B
Female
827.0
Sample C
Male
1085.0
Sample D
Male
510.2
Ventral spinal cord nTPM: 619.0
Samples: 4
Max nTPM: 677.6
Min nTPM: 493.4
Sample A
Female
493.4
Sample B
Female
674.2
Sample C
Male
677.6
Sample D
Male
630.9
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
191.8
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 191.8
Samples: 4
Max nTPM: 201.1
Min nTPM: 171.5
Sample A
201.1
Sample B
171.5
Sample C
197.2
Sample D
197.4
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.9
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 13.9
Samples: 4
Max nTPM: 16.0
Min nTPM: 12.0
Sample A
16.0
Sample A
12.0
Sample A
13.3
Sample A
14.3
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The Human Protein Atlas project is funded
