MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.6 nTPM
HPA Brain:28.0 nTPM
GTEx:15.6 nTPM
FANTOM5:88.8 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:56.4 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.8
2219 Male, age 76, both hemispheres 22.8
1870 Female, age 42, unknown 22.6
2666 Male, age 74, left hemisphere 22.0
1833 Male, age 53, unknown 20.2
1830 Male, age 51, unknown 19.5
2411 Female, age 72, unknown 19.0
1827 Male, age 72, unknown 17.7
2828 Female, age 72, unknown 16.8
2586 Male, age 75, left hemisphere 14.2
2019 Male, age 18, unknown 13.3
Dorsal raphe nucleus
nTPM: 19.5
2016 Female, age 72, unknown 22.1
2298 Female, age 72, unknown 20.3
1828 Male, age 53, unknown 18.6
2047 Male, age 72, unknown 18.6
2750 Male, age 76, both hemispheres 17.7
Inferior colliculus
nTPM: 22.8
2849 Male, age 72, unknown 27.1
1890 Male, age 53, unknown 22.8
2097 Female, age 72, unknown 21.0
1848 Female, age 42, unknown 20.5
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Periaquaductal grey, anterior
nTPM: 20.1
2502 Female, age 75, unknown 23.2
1947 Male, age 18, unknown 19.9
1795 Male, age 51, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 21.2
2850 Male, age 76, both hemispheres 24.7
1840 Male, age 53, unknown 22.5
1831 Male, age 72, unknown 19.2
2464 Female, age 72, unknown 18.4
Periaquaductal grey, lateral
nTPM: 19.6
2140 Male, age 76, both hemispheres 22.2
2053 Male, age 18, unknown 21.0
2272 Male, age 74, both hemispheres 15.6
Pretectal area
nTPM: 18.8
2825 Male, age 18, unknown 24.8
2316 Male, age 76, right hemisphere 22.5
2224 Female, age 72, unknown 21.5
2667 Female, age 75, unknown 18.7
1815 Male, age 53, unknown 18.4
1816 Male, age 51, unknown 17.9
1944 Female, age 72, unknown 17.8
2273 Male, age 74, both hemispheres 17.6
2407 Male, age 75, both hemispheres 16.4
1817 Female, age 42, unknown 16.0
2007 Male, age 72, unknown 15.0
Red nucleus
nTPM: 19.5
2503 Female, age 72, unknown 24.4
1904 Male, age 53, unknown 22.2
1821 Female, age 72, unknown 21.9
1865 Male, age 51, unknown 21.1
2227 Male, age 72, unknown 20.2
2725 Female, age 75, unknown 19.8
1954 Female, age 42, unknown 19.7
2769 Male, age 72, unknown 19.0
2823 Male, age 76, right hemisphere 18.2
2588 Male, age 74, left hemisphere 16.8
2584 Male, age 75, left hemisphere 16.0
2785 Male, age 18, unknown 14.8
Substantia nigra
nTPM: 21.0
2699 Male, age 18, unknown 26.4
2409 Female, age 72, unknown 25.8
2241 Male, age 72, unknown 24.8
2665 Male, age 74, both hemispheres 23.7
1851 Male, age 51, unknown 20.9
1916 Female, age 42, unknown 18.9
1941 Male, age 53, unknown 18.4
1889 Female, age 72, unknown 17.2
2583 Male, age 75, right hemisphere 16.8
2590 Female, age 75, unknown 16.8
Superior colliculus
nTPM: 19.1
1913 Female, age 42, unknown 21.1
1895 Male, age 76, right hemisphere 20.0
2668 Female, age 75, unknown 19.6
1839 Male, age 51, unknown 19.4
1995 Male, age 72, unknown 19.1
2587 Male, age 74, left hemisphere 18.9
2261 Male, age 18, unknown 18.7
2664 Male, age 75, both hemispheres 18.4
2087 Female, age 72, unknown 18.1
1796 Male, age 53, unknown 17.4
Ventral tegmental area
nTPM: 21.2
2218 Male, age 76, both hemispheres 24.4
1915 Female, age 42, unknown 21.8
2223 Female, age 72, unknown 21.7
1942 Male, age 51, unknown 21.4
2021 Male, age 53, unknown 20.4
2410 Female, age 72, unknown 17.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.6
Samples: 139

Max nTPM: 27.9
Min nTPM: 7.4
Std nTPM: 4.0
Median nTPM: 14.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 27.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 25.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 25.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 25.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 24.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 23.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 23.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 22.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 22.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.8
FF:10158-103A5 76 years, female 88.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.2
Samples: 4

Max nTPM: 83.2
Min nTPM: 48.5
Sample A Female 83.2
Sample B Female 72.9
Sample C Male 72.1
Sample D Male 48.5
Midbrain
nTPM: 70.8
Samples: 4

Max nTPM: 83.0
Min nTPM: 65.2
Sample A Female 65.4
Sample B Female 69.4
Sample C Male 65.2
Sample D Male 83.0
Periaqueductal gray
nTPM: 70.6
Samples: 3

Max nTPM: 80.9
Min nTPM: 61.2
Sample B Female 61.2
Sample C Male 80.9
Sample D Male 69.6
Superior colliculi
nTPM: 79.5
Samples: 4

Max nTPM: 87.2
Min nTPM: 64.9
Sample A Female 87.2
Sample B Female 64.9
Sample C Male 81.8
Sample D Male 83.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 56.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.3
Samples: 4

Max nTPM: 60.5
Min nTPM: 52.4
Sample A Male 52.4
Sample B Male 55.9
Sample C Female 60.5
Sample D Female 56.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
70546335 Antisense, RP_050623_04_B01, Mouse strain C57BL/6J (56 days, male) 7.4
73931413 Antisense, RP_051214_04_E05, Mouse strain C57BL/6J (56 days, male) 5.1

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