On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1273.5
nTPM
HPA Brain:
293.0
nTPM
GTEx:
1273.5
nTPM
FANTOM5:
51.8
Scaled Tags Per Million
Macaque:
56.7
nTPM
Mouse:
107.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
293.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 249.3
2666
Male, age 74, left hemisphere
309.8
1870
Female, age 42, unknown
286.6
2586
Male, age 75, left hemisphere
260.8
2828
Female, age 72, unknown
248.5
2219
Male, age 76, both hemispheres
242.4
2411
Female, age 72, unknown
240.0
1830
Male, age 51, unknown
237.7
1833
Male, age 53, unknown
236.2
1827
Male, age 72, unknown
222.0
2019
Male, age 18, unknown
208.5
Dorsal raphe nucleus nTPM: 242.8
2016
Female, age 72, unknown
266.0
2298
Female, age 72, unknown
254.3
2750
Male, age 76, both hemispheres
234.7
1828
Male, age 53, unknown
233.0
2047
Male, age 72, unknown
226.2
Inferior colliculus nTPM: 249.5
2849
Male, age 72, unknown
265.3
1890
Male, age 53, unknown
264.2
1848
Female, age 42, unknown
241.1
2097
Female, age 72, unknown
227.5
Median raphe nucleus nTPM: 228.2
2220
Male, age 76, midline
228.2
Periaquaductal grey, anterior nTPM: 224.6
2502
Female, age 75, unknown
258.8
1947
Male, age 18, unknown
214.5
1795
Male, age 51, unknown
200.4
Periaquaductal grey, dorsal nTPM: 246.9
1840
Male, age 53, unknown
291.5
2850
Male, age 76, both hemispheres
247.0
1831
Male, age 72, unknown
235.7
2464
Female, age 72, unknown
213.6
Periaquaductal grey, lateral nTPM: 228.7
2053
Male, age 18, unknown
271.5
2140
Male, age 76, both hemispheres
224.5
2272
Male, age 74, both hemispheres
189.9
Pretectal area nTPM: 224.3
1815
Male, age 53, unknown
248.6
2825
Male, age 18, unknown
245.9
2316
Male, age 76, right hemisphere
242.9
2224
Female, age 72, unknown
239.2
1817
Female, age 42, unknown
233.3
2407
Male, age 75, both hemispheres
224.2
2667
Female, age 75, unknown
217.6
2007
Male, age 72, unknown
209.8
1944
Female, age 72, unknown
208.4
1816
Male, age 51, unknown
207.2
2273
Male, age 74, both hemispheres
190.5
Red nucleus nTPM: 262.7
1865
Male, age 51, unknown
314.5
2503
Female, age 72, unknown
303.5
1821
Female, age 72, unknown
291.0
1904
Male, age 53, unknown
281.3
2725
Female, age 75, unknown
268.7
2769
Male, age 72, unknown
261.8
2588
Male, age 74, left hemisphere
254.7
2584
Male, age 75, left hemisphere
252.2
2227
Male, age 72, unknown
244.2
1954
Female, age 42, unknown
239.5
2785
Male, age 18, unknown
225.4
2823
Male, age 76, right hemisphere
215.3
Substantia nigra nTPM: 293.0
2409
Female, age 72, unknown
376.6
2699
Male, age 18, unknown
373.2
1851
Male, age 51, unknown
346.1
2665
Male, age 74, both hemispheres
340.8
2241
Male, age 72, unknown
321.7
1916
Female, age 42, unknown
288.8
1889
Female, age 72, unknown
241.4
2590
Female, age 75, unknown
237.3
2583
Male, age 75, right hemisphere
208.0
1941
Male, age 53, unknown
195.6
Superior colliculus nTPM: 246.7
2587
Male, age 74, left hemisphere
309.5
1913
Female, age 42, unknown
294.1
1995
Male, age 72, unknown
287.3
2668
Female, age 75, unknown
252.8
1839
Male, age 51, unknown
241.6
2664
Male, age 75, both hemispheres
234.8
1796
Male, age 53, unknown
230.4
1895
Male, age 76, right hemisphere
217.3
2261
Male, age 18, unknown
202.3
2087
Female, age 72, unknown
197.0
Ventral tegmental area nTPM: 267.6
1915
Female, age 42, unknown
303.3
2021
Male, age 53, unknown
296.7
2223
Female, age 72, unknown
289.6
2410
Female, age 72, unknown
259.3
1942
Male, age 51, unknown
230.2
2218
Male, age 76, both hemispheres
226.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1273.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1273.5
Samples: 183
Max nTPM: 2968.7
Min nTPM: 379.0
Std nTPM: 482.4
Median nTPM: 1202.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2968.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2957.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2876.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2480.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2299.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2297.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2241.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2192.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2157.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2112.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
2103.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2063.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
2014.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
2012.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1997.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1996.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1985.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1973.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1962.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1954.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1921.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1919.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1865.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1859.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1846.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1819.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1786.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1771.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1767.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1758.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1750.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1707.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1697.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1689.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1672.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1665.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1632.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1624.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1594.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1586.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1584.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1579.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1575.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1572.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1554.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1551.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1543.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1527.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1505.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1501.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1498.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1495.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1495.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1490.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1488.6
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1481.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1474.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1452.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1445.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1440.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1439.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1421.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1406.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1395.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1382.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1380.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1362.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1357.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1350.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1343.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1335.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1333.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1330.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1328.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1323.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1322.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1319.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1311.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1305.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1293.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1283.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1279.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1279.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1273.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1272.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1269.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1262.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1247.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1238.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1226.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1219.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1202.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1199.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1186.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1175.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1148.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1141.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1137.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1134.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1131.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1126.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1111.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1100.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1098.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1086.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1081.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1079.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1069.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1066.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1052.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1044.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1037.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1033.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1022.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1018.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1015.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1013.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1009.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1003.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
997.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
995.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
983.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
976.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
972.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
957.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
953.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
951.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
947.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
943.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
943.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
939.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
932.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
924.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
919.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
918.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
915.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
906.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
905.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
905.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
894.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
889.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
888.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
885.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
879.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
876.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
872.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
870.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
861.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
848.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
847.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
842.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
836.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
836.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
828.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
824.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
807.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
802.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
799.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
795.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
792.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
788.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
784.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
770.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
768.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
756.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
742.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
725.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
723.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
715.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
688.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
678.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
665.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
663.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
663.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
659.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
651.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
645.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
638.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
590.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
510.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
477.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
438.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
379.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 55.6
Samples: 1
Max nTPM: 55.6
Min nTPM: 55.6
Sample A
55.6
Midbrain nTPM: 56.7
Samples: 1
Max nTPM: 56.7
Min nTPM: 56.7
Sample A
56.7
Superior colliculi nTPM: 45.3
Samples: 1
Max nTPM: 45.3
Min nTPM: 45.3
Sample A
45.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 107.8
Samples: 4
Max nTPM: 114.1
Min nTPM: 101.2
Sample A
114.1
Sample B
106.6
Sample C
101.2
Sample D
109.4
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The Human Protein Atlas project is funded
