MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1273.5 nTPM
HPA Brain:292.1 nTPM
GTEx:1273.5 nTPM
FANTOM5:51.8 Scaled Tags Per Million
Mouse:169.9 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 292.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.5
2666 Male, age 74, left hemisphere 308.5
1870 Female, age 42, unknown 285.8
2586 Male, age 75, left hemisphere 260.8
2828 Female, age 72, unknown 247.7
2219 Male, age 76, both hemispheres 241.6
2411 Female, age 72, unknown 239.3
1830 Male, age 51, unknown 237.0
1833 Male, age 53, unknown 235.4
1827 Male, age 72, unknown 221.3
2019 Male, age 18, unknown 207.9
Dorsal raphe nucleus
nTPM: 242.0
2016 Female, age 72, unknown 264.9
2298 Female, age 72, unknown 253.4
2750 Male, age 76, both hemispheres 233.9
1828 Male, age 53, unknown 232.3
2047 Male, age 72, unknown 225.6
Inferior colliculus
nTPM: 248.7
2849 Male, age 72, unknown 264.4
1890 Male, age 53, unknown 263.4
1848 Female, age 42, unknown 240.3
2097 Female, age 72, unknown 226.7
Median raphe nucleus
nTPM: 227.5
2220 Male, age 76, midline 227.5
Periaquaductal grey, anterior
nTPM: 223.9
2502 Female, age 75, unknown 257.9
1947 Male, age 18, unknown 213.9
1795 Male, age 51, unknown 199.7
Periaquaductal grey, dorsal
nTPM: 246.1
1840 Male, age 53, unknown 290.6
2850 Male, age 76, both hemispheres 246.1
1831 Male, age 72, unknown 234.9
2464 Female, age 72, unknown 212.9
Periaquaductal grey, lateral
nTPM: 227.8
2053 Male, age 18, unknown 270.7
2140 Male, age 76, both hemispheres 223.7
2272 Male, age 74, both hemispheres 189.0
Pretectal area
nTPM: 223.7
1815 Male, age 53, unknown 248.0
2825 Male, age 18, unknown 245.1
2316 Male, age 76, right hemisphere 242.1
2224 Female, age 72, unknown 238.4
1817 Female, age 42, unknown 232.6
2407 Male, age 75, both hemispheres 224.0
2667 Female, age 75, unknown 217.0
2007 Male, age 72, unknown 209.1
1944 Female, age 72, unknown 207.8
1816 Male, age 51, unknown 206.7
2273 Male, age 74, both hemispheres 189.7
Red nucleus
nTPM: 261.9
1865 Male, age 51, unknown 313.5
2503 Female, age 72, unknown 302.6
1821 Female, age 72, unknown 290.1
1904 Male, age 53, unknown 280.2
2725 Female, age 75, unknown 267.8
2769 Male, age 72, unknown 260.9
2588 Male, age 74, left hemisphere 253.8
2584 Male, age 75, left hemisphere 252.2
2227 Male, age 72, unknown 243.5
1954 Female, age 42, unknown 238.7
2785 Male, age 18, unknown 224.6
2823 Male, age 76, right hemisphere 214.6
Substantia nigra
nTPM: 292.1
2409 Female, age 72, unknown 375.4
2699 Male, age 18, unknown 372.0
1851 Male, age 51, unknown 345.0
2665 Male, age 74, both hemispheres 339.3
2241 Male, age 72, unknown 320.9
1916 Female, age 42, unknown 287.6
1889 Female, age 72, unknown 240.6
2590 Female, age 75, unknown 236.6
2583 Male, age 75, right hemisphere 208.0
1941 Male, age 53, unknown 195.1
Superior colliculus
nTPM: 245.9
2587 Male, age 74, left hemisphere 308.2
1913 Female, age 42, unknown 293.0
1995 Male, age 72, unknown 286.4
2668 Female, age 75, unknown 252.0
1839 Male, age 51, unknown 240.8
2664 Male, age 75, both hemispheres 234.6
1796 Male, age 53, unknown 229.6
1895 Male, age 76, right hemisphere 216.6
2261 Male, age 18, unknown 201.7
2087 Female, age 72, unknown 196.3
Ventral tegmental area
nTPM: 266.7
1915 Female, age 42, unknown 302.3
2021 Male, age 53, unknown 295.8
2223 Female, age 72, unknown 288.6
2410 Female, age 72, unknown 258.3
1942 Male, age 51, unknown 229.4
2218 Male, age 76, both hemispheres 225.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1273.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1273.5
Samples: 183

Max nTPM: 2968.7
Min nTPM: 379.0
Std nTPM: 482.4
Median nTPM: 1202.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2968.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2957.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2876.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2480.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2299.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2297.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2241.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2192.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2157.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2112.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2103.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.8
FF:10158-103A5 76 years, female 51.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 169.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.9
Samples: 4

Max nTPM: 187.2
Min nTPM: 158.5
Sample A Male 187.2
Sample B Male 166.4
Sample C Female 158.5
Sample D Female 167.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
69262228 Antisense, RP_050301_01_F08, Mouse strain C57BL/6J (56 days, male) 10.7

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