We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FOS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • FOS
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:118.3 nTPM
HPA Brain:90.9 nTPM
GTEx:118.3 nTPM
FANTOM5:207.7 Scaled Tags Per Million
Pig:14.9 nTPM
Mouse:17.6 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.9
Sample id Sample description nTPM
Amygdala
nTPM: 90.9
1987 Female, age 91, left hemisphere 198.2
2517 Female, age 94, left hemisphere 69.1
2514 Male, age 75, right hemisphere 64.6
2695 Female, age 67, right hemisphere 63.5
2814 Male, age 76, right hemisphere 59.0
Basal amygdala
nTPM: 56.0
2827 Female, age 67, right hemisphere 100.8
2110 Male, age 80, left hemisphere 70.3
1955 Male, age 76, both hemispheres 56.0
2685 Female, age 94, left hemisphere 45.8
2609 Male, age 75, right hemisphere 34.0
2243 Female, age 91, right hemisphere 29.3
Central amygdala
nTPM: 72.0
2701 Female, age 91, right hemisphere 131.2
2515 Male, age 75, right hemisphere 87.1
2826 Female, age 94, left hemisphere 50.8
2239 Male, age 80, left hemisphere 49.6
1905 Male, age 76, both hemispheres 41.5
Corticomedial amygdala
nTPM: 63.2
2242 Female, age 91, right hemisphere 112.0
2535 Female, age 67, right hemisphere 69.3
2240 Male, age 76, both hemispheres 67.6
2429 Female, age 94, left hemisphere 50.0
2428 Male, age 75, right hemisphere 41.1
2829 Male, age 80, left hemisphere 39.0
Lateral amygdala
nTPM: 73.8
2830 Female, age 67, right hemisphere 135.7
2256 Male, age 80, left hemisphere 107.8
2255 Female, age 91, right hemisphere 78.2
2534 Female, age 94, left hemisphere 45.8
1883 Male, age 76, both hemispheres 44.3
2516 Male, age 75, right hemisphere 31.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 118.3
Samples: 181

Max nTPM: 1404.5
Min nTPM: 3.7
Std nTPM: 154.9
Median nTPM: 65.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1404.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 777.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 555.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 499.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 486.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 465.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 464.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 452.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 439.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 402.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 382.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 375.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 352.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 313.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 297.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 290.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 286.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 276.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 276.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 274.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 273.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 272.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 259.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 249.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 247.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 210.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 206.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 203.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 201.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 197.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 193.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 192.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 189.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 183.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 179.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 173.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 157.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 153.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 152.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 151.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 149.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 148.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 142.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 141.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 137.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 135.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 127.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 125.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 118.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 114.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 106.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 106.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 106.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 105.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 103.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 100.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 97.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 97.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 96.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 94.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 92.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 91.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 85.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 83.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 82.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 82.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 82.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 81.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 79.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 78.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 77.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 76.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 72.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 70.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 70.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 69.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 69.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 67.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 66.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 66.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 65.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 63.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 62.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 61.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 61.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 61.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 60.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 60.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 59.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 58.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 58.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 57.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 57.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 56.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 53.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 52.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 51.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 51.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 50.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 50.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 48.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 48.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 48.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 48.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 48.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 47.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 47.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 47.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 46.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 46.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 46.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 46.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 46.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 45.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 45.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 44.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 44.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 43.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 42.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 42.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 41.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 39.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 38.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 37.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 37.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 36.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 35.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 34.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 32.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 32.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 31.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 30.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 29.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 28.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 27.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 26.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 25.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 24.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 23.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 23.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 23.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 22.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 22.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 19.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 19.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 19.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 18.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 18.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 18.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 17.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 17.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 17.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 16.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 16.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 15.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 14.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 14.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 14.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 14.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 13.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 13.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 12.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 11.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 9.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 7.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 6.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

207.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 207.7
FF:10151-102I7 76 years, female 207.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.9
Pig sample Sample description nTPM
Amygdala
nTPM: 14.9
Samples: 4

Max nTPM: 20.2
Min nTPM: 7.6
Sample A Female 19.6
Sample B Female 7.6
Sample C Male 20.2
Sample D Male 12.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.6
Samples: 4

Max nTPM: 23.1
Min nTPM: 10.6
Sample A Male 15.3
Sample B Male 23.1
Sample C Female 10.6
Sample D Female 21.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
80342219 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 4.8
459 Antisense, RP_Baylor_253909, Mouse strain C57BL/6J (56 days, male) 3.7
79912554 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo