MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:143.1 nTPM
HPA Brain:136.4 nTPM
GTEx:143.1 nTPM
FANTOM5:292.4 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:12.8 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 136.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.7
2219 Male, age 76, both hemispheres 196.5
2586 Male, age 75, left hemisphere 86.1
1833 Male, age 53, unknown 81.2
2666 Male, age 74, left hemisphere 80.0
2411 Female, age 72, unknown 75.0
1830 Male, age 51, unknown 56.1
2828 Female, age 72, unknown 53.3
1870 Female, age 42, unknown 50.6
2019 Male, age 18, unknown 48.6
1827 Male, age 72, unknown 39.2
Dorsal raphe nucleus
nTPM: 110.4
2298 Female, age 72, unknown 215.8
2016 Female, age 72, unknown 148.0
1828 Male, age 53, unknown 81.5
2750 Male, age 76, both hemispheres 59.5
2047 Male, age 72, unknown 47.5
Inferior colliculus
nTPM: 67.8
2097 Female, age 72, unknown 84.6
2849 Male, age 72, unknown 72.8
1890 Male, age 53, unknown 58.8
1848 Female, age 42, unknown 55.1
Median raphe nucleus
nTPM: 74.0
2220 Male, age 76, midline 74.0
Periaquaductal grey, anterior
nTPM: 124.8
1795 Male, age 51, unknown 240.1
1947 Male, age 18, unknown 68.9
2502 Female, age 75, unknown 65.3
Periaquaductal grey, dorsal
nTPM: 133.0
1831 Male, age 72, unknown 290.2
2464 Female, age 72, unknown 84.5
2850 Male, age 76, both hemispheres 79.5
1840 Male, age 53, unknown 77.8
Periaquaductal grey, lateral
nTPM: 136.4
2272 Male, age 74, both hemispheres 230.3
2053 Male, age 18, unknown 91.1
2140 Male, age 76, both hemispheres 87.9
Pretectal area
nTPM: 78.4
2224 Female, age 72, unknown 189.9
2273 Male, age 74, both hemispheres 177.5
2667 Female, age 75, unknown 75.7
2407 Male, age 75, both hemispheres 67.7
2825 Male, age 18, unknown 66.5
2316 Male, age 76, right hemisphere 59.7
1815 Male, age 53, unknown 53.9
1817 Female, age 42, unknown 52.4
2007 Male, age 72, unknown 46.0
1944 Female, age 72, unknown 43.2
1816 Male, age 51, unknown 30.5
Red nucleus
nTPM: 61.3
1904 Male, age 53, unknown 107.1
2785 Male, age 18, unknown 72.7
2725 Female, age 75, unknown 71.5
2584 Male, age 75, left hemisphere 70.2
1821 Female, age 72, unknown 65.9
2227 Male, age 72, unknown 63.4
2769 Male, age 72, unknown 63.0
1865 Male, age 51, unknown 56.5
2503 Female, age 72, unknown 51.0
2588 Male, age 74, left hemisphere 44.9
2823 Male, age 76, right hemisphere 36.5
1954 Female, age 42, unknown 32.8
Substantia nigra
nTPM: 76.7
2699 Male, age 18, unknown 163.2
1851 Male, age 51, unknown 120.4
2590 Female, age 75, unknown 101.1
2665 Male, age 74, both hemispheres 78.9
2583 Male, age 75, right hemisphere 69.6
1941 Male, age 53, unknown 54.0
1889 Female, age 72, unknown 51.0
2241 Male, age 72, unknown 51.0
1916 Female, age 42, unknown 45.1
2409 Female, age 72, unknown 32.5
Superior colliculus
nTPM: 83.1
1995 Male, age 72, unknown 154.7
1913 Female, age 42, unknown 121.2
2587 Male, age 74, left hemisphere 105.7
1796 Male, age 53, unknown 104.2
2261 Male, age 18, unknown 74.2
2668 Female, age 75, unknown 59.3
2664 Male, age 75, both hemispheres 58.6
1839 Male, age 51, unknown 55.2
2087 Female, age 72, unknown 51.6
1895 Male, age 76, right hemisphere 46.6
Ventral tegmental area
nTPM: 85.3
1915 Female, age 42, unknown 140.3
2223 Female, age 72, unknown 95.6
2021 Male, age 53, unknown 82.1
1942 Male, age 51, unknown 75.5
2410 Female, age 72, unknown 60.3
2218 Male, age 76, both hemispheres 57.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 143.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 143.1
Samples: 183

Max nTPM: 852.3
Min nTPM: 11.0
Std nTPM: 138.6
Median nTPM: 94.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 852.3
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 659.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 605.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 562.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 503.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 502.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 500.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 483.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 474.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 469.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 466.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 292.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 292.4
FF:10158-103A5 76 years, female 292.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.0
Samples: 4

Max nTPM: 71.2
Min nTPM: 37.3
Sample A Female 45.9
Sample B Female 71.2
Sample C Male 37.3
Sample D Male 37.6
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 47.8
Min nTPM: 12.0
Sample A Female 34.0
Sample B Female 12.0
Sample C Male 47.8
Sample D Male 27.6
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 21.1
Min nTPM: 8.2
Sample B Female 8.2
Sample C Male 21.1
Sample D Male 10.8
Superior colliculi
nTPM: 58.5
Samples: 4

Max nTPM: 70.0
Min nTPM: 47.3
Sample A Female 68.4
Sample B Female 70.0
Sample C Male 48.3
Sample D Male 47.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 16.8
Min nTPM: 9.4
Sample A Male 14.7
Sample B Male 16.8
Sample C Female 9.4
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
459 Antisense, RP_Baylor_253909, Mouse strain C57BL/6J (56 days, male) 2.5
80342219 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 2.0
79912554 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 1.5

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