HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:145.7 nTPM
HPA Brain:81.7 nTPM
GTEx:145.7 nTPM
FANTOM5:235.9 Scaled Tags Per Million
Pig:40.4 nTPM
Mouse:26.8 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018531
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 81.7
Sample id Sample description nTPM
Hippocampus
nTPM: 76.6
1898 Male, age 80, left hemisphere 93.9
1855 Male, age 76, left hemisphere 92.7
2529 Female, age 94, left hemisphere 80.7
2621 Female, age 67, right hemisphere 79.5
1911 Female, age 85, right hemisphere 63.8
2148 Female, age 91, left hemisphere 48.9
Dentate gyrus
nTPM: 63.6
2010 Male, age 76, both hemispheres 77.7
2531 Female, age 67, both hemispheres 76.6
2528 Male, age 74, both hemispheres 68.9
2530 Female, age 94, left hemisphere 62.1
1927 Female, age 91, both hemispheres 61.6
2246 Female, age 85, both hemispheres 34.9
Entorhinal gyrus
nTPM: 61.1
2117 Female, age 91, right hemisphere 105.3
1787 Male, age 76, left hemisphere 90.2
2686 Male, age 75, right hemisphere 60.6
2764 Male, age 80, right hemisphere 42.1
1938 Female, age 85, left hemisphere 38.0
2613 Female, age 94, left hemisphere 30.7
Hippocampus, CA1
nTPM: 66.3
2045 Male, age 76, both hemispheres 95.0
1873 Female, age 85, both hemispheres 77.6
2082 Female, age 91, right hemisphere 73.1
2749 Male, age 80, left hemisphere 54.6
2527 Male, age 74, both hemispheres 31.0
Hippocampus, CA2
nTPM: 81.7
1940 Female, age 85, left hemisphere 127.3
2249 Male, age 74, both hemispheres 110.0
1892 Male, age 76, both hemispheres 77.9
2113 Female, age 91, right hemisphere 65.4
2437 Female, age 94, left hemisphere 59.9
1963 Male, age 80, left hemisphere 49.6
Hippocampus, CA3
nTPM: 76.0
2436 Male, age 74, both hemispheres 151.2
1867 Male, age 76, both hemispheres 92.6
2137 Male, age 80, left hemisphere 74.2
2861 Female, age 67, both hemispheres 62.5
1891 Female, age 85, both hemispheres 39.5
2620 Female, age 94, left hemisphere 35.8
Parahippocampal cortex
nTPM: 47.6
2250 Female, age 67, right hemisphere 75.1
2018 Male, age 76, both hemispheres 70.2
2245 Female, age 91, both hemispheres 67.4
1990 Female, age 91, right hemisphere 63.2
2622 Female, age 67, right hemisphere 47.3
1933 Female, age 85, both hemispheres 38.4
2693 Female, age 94, both hemispheres 35.2
2532 Female, age 72, left hemisphere 31.3
1850 Male, age 80, both hemispheres 29.0
2692 Male, age 74, both hemispheres 19.2
Perirhinal gyrus
nTPM: 60.4
2848 Male, age 76, right hemisphere 97.1
1841 Female, age 85, right hemisphere 74.0
2521 Female, age 94, right hemisphere 44.8
1794 Male, age 80, right hemisphere 44.3
1847 Female, age 91, left hemisphere 41.7
Subiculum
nTPM: 62.4
2042 Male, age 76, both hemispheres 92.6
2729 Female, age 91, right hemisphere 88.5
1901 Male, age 80, both hemispheres 67.4
2619 Male, age 74, both hemispheres 48.5
2438 Female, age 94, left hemisphere 44.7
1977 Female, age 85, both hemispheres 33.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 145.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 145.7
Samples: 255

Max nTPM: 909.0
Min nTPM: 8.3
Std nTPM: 141.3
Median nTPM: 96.2
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 909.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 756.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 724.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 694.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 562.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 527.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 520.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 517.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 481.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 457.0
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 454.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 235.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 235.9
FF:10169-103B7 60 years, female 301.1
FF:10153-102I9 76 years, female 170.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 40.4
Pig sample Sample description nTPM
Subiculum
nTPM: 34.6
Samples: 4

Max nTPM: 58.8
Min nTPM: 11.8
Sample A Female 31.0
Sample B Female 11.8
Sample C Male 58.8
Sample D Male 36.7
Dorsal hippocampus
nTPM: 15.3
Samples: 4

Max nTPM: 34.2
Min nTPM: 6.5
Sample A Female 12.6
Sample B Female 6.5
Sample C Male 34.2
Sample D Male 7.8
Entorhinal cortex
nTPM: 40.4
Samples: 4

Max nTPM: 64.8
Min nTPM: 21.9
Sample A Female 64.8
Sample B Female 21.9
Sample C Male 36.3
Sample D Male 38.7
Ventral hippocampus
nTPM: 25.3
Samples: 4

Max nTPM: 56.1
Min nTPM: 12.1
Sample A Female 14.8
Sample B Female 12.1
Sample C Male 56.1
Sample D Male 18.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 26.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 10.0
Sample A Male 25.2
Sample B Male 51.4
Sample C Female 10.0
Sample D Female 20.6
Hippocampal formation
nTPM: 7.4
Samples: 4

Max nTPM: 9.1
Min nTPM: 5.2
Sample A Male 9.1
Sample B Male 8.4
Sample C Female 5.2
Sample D Female 6.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
80342219 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 2.9
79912554 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 2.8
459 Antisense, RP_Baylor_253909, Mouse strain C57BL/6J (56 days, male) 2.7

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