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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:231.3 nTPM
HPA Brain:141.9 nTPM
GTEx:231.3 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:137.6 nTPM
Allen mouse:4.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.9
Sample id Sample description nTPM
Amygdala
nTPM: 113.0
2695 Female, age 67, right hemisphere 140.6
2517 Female, age 94, left hemisphere 132.4
1987 Female, age 91, left hemisphere 125.0
2514 Male, age 75, right hemisphere 91.4
2814 Male, age 76, right hemisphere 75.6
Basal amygdala
nTPM: 139.0
2110 Male, age 80, left hemisphere 153.0
2609 Male, age 75, right hemisphere 148.4
2685 Female, age 94, left hemisphere 148.1
2827 Female, age 67, right hemisphere 141.1
2243 Female, age 91, right hemisphere 136.8
1955 Male, age 76, both hemispheres 106.8
Central amygdala
nTPM: 135.7
2826 Female, age 94, left hemisphere 209.0
2515 Male, age 75, right hemisphere 150.7
2239 Male, age 80, left hemisphere 140.9
2701 Female, age 91, right hemisphere 101.3
1905 Male, age 76, both hemispheres 76.5
Corticomedial amygdala
nTPM: 131.3
2829 Male, age 80, left hemisphere 173.9
2242 Female, age 91, right hemisphere 146.3
2535 Female, age 67, right hemisphere 142.3
2428 Male, age 75, right hemisphere 119.3
2429 Female, age 94, left hemisphere 108.8
2240 Male, age 76, both hemispheres 97.0
Lateral amygdala
nTPM: 141.9
2534 Female, age 94, left hemisphere 189.7
2830 Female, age 67, right hemisphere 156.0
2256 Male, age 80, left hemisphere 155.6
2516 Male, age 75, right hemisphere 133.3
2255 Female, age 91, right hemisphere 115.3
1883 Male, age 76, both hemispheres 101.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 231.3
Samples: 181

Max nTPM: 647.0
Min nTPM: 92.4
Std nTPM: 76.8
Median nTPM: 218.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 647.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 536.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 456.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 450.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 444.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 439.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 422.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 405.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 400.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 376.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 374.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 362.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 362.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 335.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 335.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 324.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 320.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 319.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 314.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 310.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 308.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 303.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 301.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 296.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 292.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 287.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 286.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 282.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 282.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 280.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 278.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 274.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 274.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 273.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 273.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 270.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 268.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 266.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 265.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 264.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 264.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 263.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 262.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 261.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 261.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 261.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 260.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 259.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 257.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 256.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 255.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 254.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 253.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 251.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 249.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 247.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 246.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 246.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 245.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 244.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 243.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 243.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 242.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 242.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 240.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 239.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 238.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 237.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 235.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 235.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 234.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 233.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 231.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 231.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 230.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 226.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 226.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 226.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 225.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 225.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 225.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 223.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 223.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 222.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 221.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 221.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 220.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 220.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 219.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 219.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 218.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 217.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 217.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 217.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 216.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 214.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 213.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 212.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 212.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 211.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 211.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 209.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 209.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 209.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 208.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 207.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 207.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 206.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 205.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 205.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 204.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 203.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 203.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 203.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 202.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 201.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 201.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 199.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 197.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 197.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 196.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 194.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 194.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 194.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 194.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 192.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 191.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 191.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 189.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 185.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 184.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 184.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 180.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 179.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 179.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 178.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 177.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 177.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 177.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 176.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 174.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 174.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 173.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 173.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 172.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 171.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 171.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 170.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 168.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 167.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 166.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 165.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 162.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 161.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 160.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 159.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 159.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 159.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 159.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 158.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 158.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 157.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 157.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 157.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 156.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 153.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 153.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 150.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 148.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 147.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 145.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 142.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 141.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 140.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 135.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 134.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 133.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 129.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 123.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 120.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 92.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.1
FF:10151-102I7 76 years, female 55.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.8
Pig sample Sample description nTPM
Amygdala
nTPM: 41.8
Samples: 4

Max nTPM: 57.4
Min nTPM: 30.9
Sample A Female 57.4
Sample B Female 33.1
Sample C Male 45.7
Sample D Male 30.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.6
Samples: 4

Max nTPM: 148.6
Min nTPM: 128.0
Sample A Male 135.9
Sample B Male 137.9
Sample C Female 148.6
Sample D Female 128.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.1
70612727 Antisense, RP_050725_01_C05, Mouse strain C57BL/6J (56 days, male) 6.1
75695661 Antisense, RP_060518_04_C12, Mouse strain C57BL/6J (56 days, male) 2.2

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