HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:211.9 nTPM
HPA Brain:167.1 nTPM
GTEx:211.9 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:75.5 nTPM
Mouse:102.9 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042664
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 167.1
Sample id Sample description nTPM
Hippocampus
nTPM: 146.1
2529 Female, age 94, left hemisphere 152.7
1898 Male, age 80, left hemisphere 152.2
1911 Female, age 85, right hemisphere 145.6
2621 Female, age 67, right hemisphere 145.5
1855 Male, age 76, left hemisphere 142.4
2148 Female, age 91, left hemisphere 137.8
Dentate gyrus
nTPM: 151.6
2531 Female, age 67, both hemispheres 174.3
2530 Female, age 94, left hemisphere 160.8
1927 Female, age 91, both hemispheres 152.6
2010 Male, age 76, both hemispheres 149.1
2246 Female, age 85, both hemispheres 140.2
2528 Male, age 74, both hemispheres 132.8
Entorhinal gyrus
nTPM: 131.3
2764 Male, age 80, right hemisphere 150.4
2613 Female, age 94, left hemisphere 146.6
1938 Female, age 85, left hemisphere 145.3
1787 Male, age 76, left hemisphere 137.6
2686 Male, age 75, right hemisphere 106.9
2117 Female, age 91, right hemisphere 100.8
Hippocampus, CA1
nTPM: 149.6
2749 Male, age 80, left hemisphere 196.5
2045 Male, age 76, both hemispheres 195.4
1873 Female, age 85, both hemispheres 138.1
2527 Male, age 74, both hemispheres 116.6
2082 Female, age 91, right hemisphere 101.5
Hippocampus, CA2
nTPM: 135.1
1892 Male, age 76, both hemispheres 178.5
1963 Male, age 80, left hemisphere 165.9
2437 Female, age 94, left hemisphere 135.2
1940 Female, age 85, left hemisphere 123.5
2249 Male, age 74, both hemispheres 106.4
2113 Female, age 91, right hemisphere 101.2
Hippocampus, CA3
nTPM: 167.1
2620 Female, age 94, left hemisphere 210.8
2137 Male, age 80, left hemisphere 204.7
1867 Male, age 76, both hemispheres 185.5
2861 Female, age 67, both hemispheres 175.6
1891 Female, age 85, both hemispheres 121.0
2436 Male, age 74, both hemispheres 104.9
Parahippocampal cortex
nTPM: 126.3
2245 Female, age 91, both hemispheres 156.0
2018 Male, age 76, both hemispheres 144.3
2532 Female, age 72, left hemisphere 143.5
1933 Female, age 85, both hemispheres 138.8
1850 Male, age 80, both hemispheres 129.0
2622 Female, age 67, right hemisphere 124.7
2250 Female, age 67, right hemisphere 120.0
2693 Female, age 94, both hemispheres 111.6
1990 Female, age 91, right hemisphere 99.3
2692 Male, age 74, both hemispheres 95.6
Perirhinal gyrus
nTPM: 152.8
2521 Female, age 94, right hemisphere 170.4
1794 Male, age 80, right hemisphere 168.2
1841 Female, age 85, right hemisphere 159.7
2848 Male, age 76, right hemisphere 143.4
1847 Female, age 91, left hemisphere 122.1
Subiculum
nTPM: 121.0
1977 Female, age 85, both hemispheres 136.4
2042 Male, age 76, both hemispheres 128.9
1901 Male, age 80, both hemispheres 127.7
2619 Male, age 74, both hemispheres 117.9
2438 Female, age 94, left hemisphere 110.1
2729 Female, age 91, right hemisphere 104.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 211.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 211.9
Samples: 255

Max nTPM: 439.6
Min nTPM: 83.0
Std nTPM: 76.3
Median nTPM: 199.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 439.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 431.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 427.7
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 419.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 416.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 402.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 399.8
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 395.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 394.3
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 392.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 380.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.4
FF:10153-102I9 76 years, female 50.2
FF:10169-103B7 60 years, female 44.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 75.5
Pig sample Sample description nTPM
Subiculum
nTPM: 63.3
Samples: 4

Max nTPM: 89.4
Min nTPM: 46.2
Sample A Female 89.4
Sample B Female 46.2
Sample C Male 54.1
Sample D Male 63.5
Dorsal hippocampus
nTPM: 55.5
Samples: 4

Max nTPM: 65.1
Min nTPM: 41.2
Sample A Female 64.6
Sample B Female 51.1
Sample C Male 65.1
Sample D Male 41.2
Entorhinal cortex
nTPM: 75.6
Samples: 4

Max nTPM: 85.0
Min nTPM: 60.8
Sample A Female 80.4
Sample B Female 60.8
Sample C Male 85.0
Sample D Male 76.0
Ventral hippocampus
nTPM: 49.6
Samples: 4

Max nTPM: 70.0
Min nTPM: 40.6
Sample A Female 46.0
Sample B Female 40.6
Sample C Male 70.0
Sample D Male 41.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 102.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 102.9
Samples: 4

Max nTPM: 111.7
Min nTPM: 93.2
Sample A Male 105.3
Sample B Male 111.7
Sample C Female 93.2
Sample D Female 101.3
Hippocampal formation
nTPM: 71.6
Samples: 4

Max nTPM: 86.1
Min nTPM: 60.3
Sample A Male 78.4
Sample B Male 60.3
Sample C Female 61.4
Sample D Female 86.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
70612727 Antisense, RP_050725_01_C05, Mouse strain C57BL/6J (56 days, male) 3.7
75695661 Antisense, RP_060518_04_C12, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo