MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.6 nTPM
HPA Brain:142.9 nTPM
GTEx:128.6 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:84.9 nTPM
Mouse:24.7 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 142.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.4
2586 Male, age 75, left hemisphere 149.8
2666 Male, age 74, left hemisphere 109.1
2828 Female, age 72, unknown 108.4
1870 Female, age 42, unknown 106.7
1827 Male, age 72, unknown 94.3
2411 Female, age 72, unknown 83.4
1833 Male, age 53, unknown 82.8
1830 Male, age 51, unknown 76.2
2219 Male, age 76, both hemispheres 75.3
2019 Male, age 18, unknown 58.2
Dorsal raphe nucleus
nTPM: 142.9
2047 Male, age 72, unknown 201.0
1828 Male, age 53, unknown 175.1
2298 Female, age 72, unknown 128.4
2016 Female, age 72, unknown 108.5
2750 Male, age 76, both hemispheres 101.6
Inferior colliculus
nTPM: 89.7
2849 Male, age 72, unknown 98.8
1890 Male, age 53, unknown 88.2
1848 Female, age 42, unknown 87.2
2097 Female, age 72, unknown 84.7
Median raphe nucleus
nTPM: 123.5
2220 Male, age 76, midline 123.5
Periaquaductal grey, anterior
nTPM: 127.5
1795 Male, age 51, unknown 145.9
1947 Male, age 18, unknown 123.6
2502 Female, age 75, unknown 113.0
Periaquaductal grey, dorsal
nTPM: 109.3
1840 Male, age 53, unknown 133.4
2850 Male, age 76, both hemispheres 112.4
1831 Male, age 72, unknown 102.9
2464 Female, age 72, unknown 88.6
Periaquaductal grey, lateral
nTPM: 104.0
2140 Male, age 76, both hemispheres 112.4
2272 Male, age 74, both hemispheres 105.7
2053 Male, age 18, unknown 93.8
Pretectal area
nTPM: 99.1
2825 Male, age 18, unknown 119.7
2273 Male, age 74, both hemispheres 116.6
1816 Male, age 51, unknown 115.6
1944 Female, age 72, unknown 112.3
2224 Female, age 72, unknown 110.9
2667 Female, age 75, unknown 98.5
1815 Male, age 53, unknown 86.5
2316 Male, age 76, right hemisphere 84.1
2407 Male, age 75, both hemispheres 84.0
2007 Male, age 72, unknown 82.1
1817 Female, age 42, unknown 79.3
Red nucleus
nTPM: 75.1
2725 Female, age 75, unknown 99.2
2584 Male, age 75, left hemisphere 91.9
2588 Male, age 74, left hemisphere 85.4
2227 Male, age 72, unknown 81.1
2503 Female, age 72, unknown 80.7
2769 Male, age 72, unknown 80.0
2785 Male, age 18, unknown 78.5
1904 Male, age 53, unknown 66.4
1821 Female, age 72, unknown 64.1
1954 Female, age 42, unknown 64.1
1865 Male, age 51, unknown 55.4
2823 Male, age 76, right hemisphere 54.1
Substantia nigra
nTPM: 85.4
2665 Male, age 74, both hemispheres 110.5
1851 Male, age 51, unknown 106.3
1916 Female, age 42, unknown 102.2
2699 Male, age 18, unknown 101.1
2583 Male, age 75, right hemisphere 98.4
1889 Female, age 72, unknown 78.0
2590 Female, age 75, unknown 74.9
2241 Male, age 72, unknown 67.0
2409 Female, age 72, unknown 64.0
1941 Male, age 53, unknown 51.8
Superior colliculus
nTPM: 101.4
2664 Male, age 75, both hemispheres 149.2
1796 Male, age 53, unknown 118.6
2087 Female, age 72, unknown 112.1
2261 Male, age 18, unknown 111.3
2587 Male, age 74, left hemisphere 102.6
1839 Male, age 51, unknown 99.0
2668 Female, age 75, unknown 91.1
1913 Female, age 42, unknown 85.6
1995 Male, age 72, unknown 77.8
1895 Male, age 76, right hemisphere 66.5
Ventral tegmental area
nTPM: 112.0
2223 Female, age 72, unknown 139.9
2021 Male, age 53, unknown 131.7
1915 Female, age 42, unknown 126.6
1942 Male, age 51, unknown 100.8
2218 Male, age 76, both hemispheres 89.3
2410 Female, age 72, unknown 83.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 128.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.6
Samples: 183

Max nTPM: 310.4
Min nTPM: 22.8
Std nTPM: 46.0
Median nTPM: 121.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 310.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 288.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 282.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 265.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 255.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 253.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 240.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 231.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 227.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 226.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 226.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.9
Samples: 4

Max nTPM: 104.8
Min nTPM: 52.7
Sample A Female 104.8
Sample B Female 98.6
Sample C Male 83.5
Sample D Male 52.7
Midbrain
nTPM: 67.4
Samples: 4

Max nTPM: 92.8
Min nTPM: 45.9
Sample A Female 92.8
Sample B Female 50.7
Sample C Male 80.3
Sample D Male 45.9
Periaqueductal gray
nTPM: 42.5
Samples: 3

Max nTPM: 57.7
Min nTPM: 32.7
Sample B Female 32.7
Sample C Male 57.7
Sample D Male 37.2
Superior colliculi
nTPM: 76.0
Samples: 4

Max nTPM: 103.9
Min nTPM: 56.1
Sample A Female 74.6
Sample B Female 103.9
Sample C Male 69.2
Sample D Male 56.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 29.4
Min nTPM: 19.7
Sample A Male 29.4
Sample B Male 23.1
Sample C Female 19.7
Sample D Female 26.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70612727 Antisense, RP_050725_01_C05, Mouse strain C57BL/6J (56 days, male) 1.3
75695661 Antisense, RP_060518_04_C12, Mouse strain C57BL/6J (56 days, male) 0.3

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