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RPS29
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  • RPS29
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2336.3 nTPM
HPA Brain:282.4 nTPM
GTEx:2336.3 nTPM
FANTOM5:96.9 Scaled Tags Per Million
Mouse:1708.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.4
Sample id Sample description nTPM
Amygdala
nTPM: 282.4
2695 Female, age 67, right hemisphere 356.7
2514 Male, age 75, right hemisphere 295.9
1987 Female, age 91, left hemisphere 282.4
2517 Female, age 94, left hemisphere 241.8
2814 Male, age 76, right hemisphere 234.9
Basal amygdala
nTPM: 212.3
2827 Female, age 67, right hemisphere 302.3
2110 Male, age 80, left hemisphere 234.1
2685 Female, age 94, left hemisphere 226.7
2609 Male, age 75, right hemisphere 207.3
1955 Male, age 76, both hemispheres 165.7
2243 Female, age 91, right hemisphere 137.6
Central amygdala
nTPM: 242.2
2826 Female, age 94, left hemisphere 353.1
2515 Male, age 75, right hemisphere 312.2
1905 Male, age 76, both hemispheres 246.1
2239 Male, age 80, left hemisphere 167.7
2701 Female, age 91, right hemisphere 131.7
Corticomedial amygdala
nTPM: 180.5
2428 Male, age 75, right hemisphere 225.4
2429 Female, age 94, left hemisphere 196.9
2829 Male, age 80, left hemisphere 194.4
2535 Female, age 67, right hemisphere 176.8
2240 Male, age 76, both hemispheres 149.4
2242 Female, age 91, right hemisphere 139.9
Lateral amygdala
nTPM: 268.7
2830 Female, age 67, right hemisphere 373.8
2516 Male, age 75, right hemisphere 370.5
2534 Female, age 94, left hemisphere 329.6
1883 Male, age 76, both hemispheres 192.1
2256 Male, age 80, left hemisphere 191.7
2255 Female, age 91, right hemisphere 154.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2336.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2336.3
Samples: 181

Max nTPM: 8683.4
Min nTPM: 993.7
Std nTPM: 1126.3
Median nTPM: 2109.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 8683.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 7696.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6621.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 6247.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5658.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4782.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 4774.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4547.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 4481.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4076.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4044.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 3941.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3720.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 3672.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3666.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3666.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3623.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 3618.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3409.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 3400.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 3376.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 3320.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 3247.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 3190.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3176.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 3142.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 3136.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3134.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 3128.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3127.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 3065.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3052.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3042.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 3036.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2984.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 2917.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 2907.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2879.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2870.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2869.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2867.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2836.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2806.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 2804.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2759.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2714.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2711.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 2699.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2697.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2690.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2659.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2657.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 2630.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 2617.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2598.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2593.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2574.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2553.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2513.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 2508.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 2494.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 2448.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2436.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2407.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2396.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2395.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2393.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 2365.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2357.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2353.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2338.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2335.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2308.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2304.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2266.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2255.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2248.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2236.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2235.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2231.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2215.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 2207.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 2205.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2200.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2168.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2143.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 2138.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2130.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 2127.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2120.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2109.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2109.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2102.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 2098.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2086.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2086.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2080.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 2052.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2030.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1999.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1988.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1970.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1970.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1969.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1949.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1906.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1879.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1871.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1864.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1852.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1846.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1836.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1831.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1829.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1827.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1825.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1809.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1794.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1790.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1772.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1750.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1736.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1728.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1726.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1704.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1694.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1688.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1670.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1660.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1639.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1632.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1632.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1632.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1614.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1608.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1607.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1602.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1600.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1594.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1581.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1576.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1560.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1554.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1529.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1508.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1499.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1491.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1476.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1475.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1471.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1452.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1434.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1397.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1395.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1383.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1365.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1362.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1360.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1345.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1342.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1338.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1313.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1309.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1306.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1299.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1258.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1233.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1229.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1226.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1194.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1191.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1168.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1168.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1137.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1116.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1082.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1081.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1050.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1038.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1001.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 993.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.9
FF:10151-102I7 76 years, female 96.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1708.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 1708.2
Samples: 4

Max nTPM: 1937.9
Min nTPM: 1569.0
Sample A Male 1649.8
Sample B Male 1675.9
Sample C Female 1937.9
Sample D Female 1569.0

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