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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2727.8 nTPM
GTEx:2727.8 nTPM
FANTOM5:167.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004107
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2727.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2727.8
Samples: 170

Max nTPM: 8085.8
Min nTPM: 1530.1
Std nTPM: 798.0
Median nTPM: 2581.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 8085.8
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 6458.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4880.4
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 4595.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 4351.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4093.6
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 4089.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3935.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 3912.4
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3912.3
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 3812.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 3794.4
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 3778.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3742.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3684.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 3667.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3655.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3554.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3541.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3476.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3466.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3452.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3411.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3405.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3377.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3371.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3328.8
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3312.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 3291.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 3280.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 3259.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 3224.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 3207.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 3205.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 3179.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 3159.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 3158.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 3141.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3131.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 3120.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3107.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 3065.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 3041.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 3031.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3011.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3010.8
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 3009.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2996.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2983.1
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2976.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2966.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2940.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2932.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2921.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2894.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2886.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2838.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2823.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2822.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2810.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2799.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2782.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2782.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2778.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2770.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2759.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2757.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2748.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2737.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2736.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2722.8
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2702.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2701.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2689.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2679.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2666.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2664.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2661.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2616.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2614.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2595.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2588.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2583.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2582.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2581.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2580.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2561.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2559.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2551.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2537.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2535.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2535.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2529.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2523.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2521.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2520.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2517.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2515.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2511.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2490.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2449.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2439.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2434.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2431.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2430.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2407.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2406.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2404.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2403.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2401.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 2398.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2388.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2388.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2386.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2377.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2354.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2350.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2346.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2333.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2328.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2324.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2313.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 2310.0
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2292.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2284.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2280.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2257.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2256.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2251.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2243.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2237.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2223.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2222.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2194.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2186.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2164.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2160.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2152.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2130.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2120.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2119.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2082.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2078.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2069.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2039.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2039.4
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2030.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2022.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2013.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1995.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1971.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1967.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1962.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1940.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1937.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1932.7
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1917.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1911.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1853.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1837.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1831.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1798.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1741.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1677.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1674.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1656.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1613.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1601.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1533.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1530.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 167.0
FF:10204-103F6 68 years, female 167.0

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