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RPS29
HPA
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  • RPS29
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3114.7 nTPM
HPA:1302.9 nTPM
GTEx:3114.7 nTPM
FANTOM5:85.0 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004107
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1302.9
overview
Male, age 65
Small intestine sample 232
nTPM: 1656.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1170.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1223.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1161.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3114.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 3114.7
Samples: 207

Max nTPM: 9268.9
Min nTPM: 1385.5
Std nTPM: 1136.4
Median nTPM: 2896.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9268.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 6696.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6641.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 6103.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6017.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 6003.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 5824.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5422.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 5361.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 5359.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 5345.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 5071.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 5049.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 5024.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 4991.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 4776.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4742.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4740.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 4601.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4548.4
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 4535.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 4525.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 4444.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 4401.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 4335.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 4320.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 4244.8
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 4202.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 4185.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4176.2
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 4170.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 4163.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 4117.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 4074.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 4034.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4030.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 4021.5
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 3994.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 3986.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3967.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3921.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 3895.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 3881.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3875.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3868.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3833.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3829.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3829.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3826.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 3821.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3819.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3806.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3765.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 3752.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3749.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 3723.4
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 3695.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3660.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3618.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3587.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3573.4
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 3530.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3432.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3428.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3420.7
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 3413.2
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 3408.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3393.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3393.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3376.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 3317.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 3310.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3299.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3292.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3261.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3257.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3251.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3240.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 3239.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3229.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 3229.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 3221.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3219.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3206.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3198.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3191.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 3128.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3112.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3063.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3049.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3047.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 3027.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3015.7
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 3003.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 3003.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3002.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2998.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 2998.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2983.0
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 2971.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2958.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2922.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2903.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 2896.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2887.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2861.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2858.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2847.6
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2843.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 2824.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2781.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2780.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2776.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2769.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2754.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2747.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2747.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2739.9
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 2718.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2711.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2676.5
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 2673.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2638.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2622.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2613.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2604.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2594.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2581.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2559.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2537.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2515.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2508.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2507.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2501.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2494.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2489.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 2474.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2464.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2429.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2427.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2402.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2391.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2364.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2360.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2359.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2354.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2351.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2347.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2341.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2324.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2309.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2293.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2278.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2276.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2275.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2272.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2269.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2264.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2260.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2232.9
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 2232.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2223.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2213.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2212.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2191.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 2189.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2170.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2168.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2159.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2157.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2136.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2133.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2132.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2124.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2099.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2097.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2094.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2084.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2058.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2055.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2054.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2045.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2044.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2022.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2018.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2011.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2009.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1976.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1953.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1923.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1892.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1869.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1858.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1809.2
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1795.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1757.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1700.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1654.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1607.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1600.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1594.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1594.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1530.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1530.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1513.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1450.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1385.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 85.0
FF:10024-101D6 15,40,85 years, mixed 85.0

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