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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:542.9 nTPM
GTEx:542.9 nTPM
FANTOM5:46.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

542.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 542.9
Samples: 105

Max nTPM: 821.6
Min nTPM: 244.3
Std nTPM: 112.3
Median nTPM:
386_1 76 years, male 821.6
17_1 71 years, male 760.4
377_1 82 years, female 756.3
384_1 83 years, male 753.8
526_1 61 years, male 730.0
389_1 86 years, female 717.0
394_1 75 years, female 715.5
452_1 88 years, female 702.2
321_1 62 years, female 700.2
246_1 77 years, male 692.9
4_1 88 years, female 688.7
379_1 60 years, male 687.2
2_1 77 years, female 681.0
153_1 70 years, female 660.1
137_1 83 years, male 659.0
265_1 87 years, male 655.3
319_1 81 years, male 654.9
355_1 70 years, female 649.7
396_1 62 years, male 646.5
322_1 76 years, male 646.2
320_1 89 years, female 640.4
18_1 88 years, male 639.0
376_1 75 years, female 633.5
163_1 78 years, male 632.0
6_1 73 years, female 631.1
237_1 82 years, male 631.0
352_1 62 years, male 628.5
375_1 74 years, female 627.7
120_1 70 years, female 622.6
503_1 68 years, male 610.4
404_1 82 years, female 606.2
347_1 72 years, male 595.7
35_1 74 years, female 589.9
518_1 75 years, female 589.6
172_1 72 years, female 589.5
506_1 65 years, male 588.9
126_1 63 years, male 588.6
189_1 76 years, male 585.4
351_1 91 years, male 577.4
517_1 88 years, male 575.6
217_1 76 years, male 575.4
480_1 63 years, male 573.7
405_1 91 years, male 572.4
115_1 83 years, male 571.9
177_1 74 years, male 571.1
354_1 81 years, female 570.2
316_1 62 years, male 565.6
447_1 81 years, male 564.4
243_1 75 years, male 563.8
406_1 79 years, male 561.6
254_1 77 years, female 554.9
145_1 84 years, male 552.4
251_1 78 years, male 545.7
218_1 71 years, female 545.6
264_1 73 years, female 538.6
109_1 81 years, female 538.3
307_1 66 years, female 538.1
99_1 64 years, male 532.4
353_1 82 years, female 531.3
349_1 83 years, male 531.1
335_1 73 years, female 527.6
468_1 89 years, male 518.0
499_1 55 years, female 518.0
495_1 57 years, female 517.5
348_1 84 years, male 516.0
425_1 59 years, female 514.8
356_1 87 years, female 512.5
311_1 78 years, male 498.7
42_1 85 years, male 494.5
139_1 64 years, female 490.8
173_1 67 years, male 488.5
117_1 61 years, male 487.6
295_1 61 years, female 486.8
501_1 88 years, male 484.5
229_1 69 years, female 473.8
318_1 68 years, male 472.5
266_1 85 years, male 470.3
286_1 68 years, female 469.7
119_1 70 years, female 461.6
324_1 76 years, male 458.5
350_1 84 years, female 458.1
142_1 61 years, female 455.2
466_1 57 years, female 448.3
317_1 60 years, male 445.5
315_1 62 years, female 441.9
308_1 70 years, female 441.2
81_1 67 years, male 437.5
9_1 66 years, female 435.9
288_1 66 years, female 435.1
293_1 68 years, female 433.4
292_1 71 years, male 432.9
314_1 67 years, male 426.3
162_1 79 years, female 422.4
313_1 79 years, female 417.9
291_1 76 years, male 416.1
41_1 94 years, female 407.5
32_1 67 years, male 404.0
89_1 63 years, male 359.2
414_1 84 years, female 345.5
491_1 89 years, female 342.4
415_1 77 years, female 329.4
490_1 67 years, female 320.9
43_1 64 years, female 307.5
149_1 88 years, male 277.0
413_1 59 years, female 244.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 46.0
FF:10030-101E3 24-65 years, mixed 46.0

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