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TISSUE PONS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:135.1 nTPM
HPA:135.1 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:57.3 nTPM
Allen mouse:4.1 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 135.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 120.4
1984 Male, age 76, both hemispheres 123.3
2301 Female, age 85, both hemispheres 121.6
2090 Male, age 80, both hemispheres 119.7
2188 Female, age 91, both hemispheres 117.1
Dorsal cochlear nucleus
nTPM: 124.9
2802 Male, age 74, right hemisphere 130.6
2058 Male, age 76, both hemispheres 124.9
2370 Male, age 61, both hemispheres 124.1
2187 Female, age 91, both hemispheres 123.0
2378 Male, age 80, both hemispheres 121.8
Dorsal tegmental nucleus
nTPM: 122.1
2326 Male, age 74, both hemispheres 124.5
2083 Male, age 80, both hemispheres 123.6
2358 Male, age 61, both hemispheres 121.6
1936 Male, age 76, left hemisphere 118.6
Dorsolateral tegmental area
nTPM: 120.3
2360 Male, age 74, both hemispheres 124.6
2654 Male, age 80, both hemispheres 124.2
2751 Female, age 85, both hemispheres 119.6
2141 Male, age 76, both hemispheres 116.9
2337 Male, age 61, both hemispheres 116.4
Kolliker-Fuse nucleus
nTPM: 125.0
2163 Male, age 80, both hemispheres 128.6
2315 Male, age 76, right hemisphere 123.6
2793 Female, age 91, left hemisphere 122.9
Lateral lemniscal nuclei
nTPM: 130.0
2036 Male, age 80, both hemispheres 135.2
2169 Male, age 76, both hemispheres 133.3
2746 Female, age 85, left hemisphere 132.0
2453 Male, age 74, right hemisphere 130.7
2320 Female, age 91, left hemisphere 118.7
Lateral parabrachial nucleus
nTPM: 126.7
2139 Female, age 85, right hemisphere 136.9
2790 Male, age 61, both hemispheres 127.4
2013 Male, age 80, both hemispheres 125.7
2792 Male, age 76, both hemispheres 116.7
Lateral vestibular nucleus
nTPM: 125.4
2184 Male, age 76, both hemispheres 129.1
2311 Male, age 80, both hemispheres 121.6
Locus coeruleus
nTPM: 128.0
2123 Female, age 91, both hemispheres 137.1
2720 Male, age 74, both hemispheres 133.0
2014 Male, age 55, unknown 130.2
2317 Female, age 72, unknown 127.2
1980 Male, age 76, both hemispheres 126.1
2162 Male, age 80, both hemispheres 121.6
2788 Male, age 74, unknown 121.1
Medial olivary nucleus
nTPM: 117.8
2138 Female, age 91, both hemispheres 123.0
2851 Male, age 80, both hemispheres 118.7
1943 Male, age 61, both hemispheres 115.2
1962 Male, age 76, both hemispheres 114.2
Medial parabrachial nucleus
nTPM: 123.4
2170 Female, age 91, both hemispheres 126.6
2156 Male, age 61, both hemispheres 125.3
2854 Male, age 80, both hemispheres 124.2
2463 Female, age 85, right hemisphere 121.4
2786 Male, age 76, both hemispheres 119.6
Medial periolivary nuclei
nTPM: 130.6
2063 Male, age 76, both hemispheres 144.7
2171 Female, age 85, both hemispheres 139.8
2791 Male, age 74, right hemisphere 131.8
2458 Female, age 91, both hemispheres 118.9
2081 Male, age 80, both hemispheres 117.8
Motor facial nucleus
nTPM: 131.4
2062 Male, age 76, both hemispheres 149.5
2365 Male, age 74, right hemisphere 133.4
2795 Female, age 91, both hemispheres 129.9
2327 Male, age 80, both hemispheres 126.2
2697 Female, age 85, both hemispheres 125.3
2126 Male, age 61, both hemispheres 124.3
Motor trigeminal nucleus
nTPM: 123.4
2560 Male, age 74, both hemispheres 129.3
2079 Male, age 80, both hemispheres 127.1
2309 Male, age 76, both hemispheres 121.6
2335 Male, age 61, both hemispheres 121.3
2321 Female, age 91, both hemispheres 117.6
Nuclei of the trapezoid body
nTPM: 135.1
1983 Male, age 76, both hemispheres 145.0
2735 Female, age 85, both hemispheres 143.6
2159 Male, age 61, both hemispheres 138.3
2166 Male, age 80, both hemispheres 125.1
2368 Female, age 91, both hemispheres 123.4
Paramedian reticular nucleus
nTPM: 127.4
2050 Female, age 85, both hemispheres 138.1
2057 Male, age 80, both hemispheres 130.3
2313 Male, age 61, both hemispheres 125.0
2052 Male, age 76, both hemispheres 116.0
Pontine nuclei
nTPM: 133.7
2787 Female, age 85, both hemispheres 149.0
1863 Male, age 55, unknown 140.1
1968 Male, age 76, left hemisphere 139.0
2109 Female, age 72, unknown 137.9
2727 Male, age 61, right hemisphere 134.9
2454 Male, age 74, left hemisphere 125.4
2115 Male, age 80, left hemisphere 123.7
2319 Female, age 91, both hemispheres 120.1
Pontine raphe nucleus
nTPM: 130.0
2122 Female, age 85, midline 134.8
2853 Male, age 76, midline 125.2
Posteroventral cochlear nucleus
nTPM: 121.2
2752 Female, age 85, both hemispheres 127.7
2371 Male, age 61, both hemispheres 124.7
2070 Male, age 76, both hemispheres 122.7
2341 Male, age 80, both hemispheres 115.5
2135 Female, age 91, both hemispheres 115.3
Principal sensory trigeminal nucleus
nTPM: 128.6
2158 Male, age 61, both hemispheres 138.1
2008 Male, age 80, left hemisphere 131.3
2324 Male, age 76, both hemispheres 126.2
2367 Female, age 91, left hemisphere 118.6
Reticular pontine nucleus, caudal
nTPM: 125.2
2092 Male, age 76, both hemispheres 130.9
2332 Male, age 80, right hemisphere 127.4
2457 Female, age 91, both hemispheres 122.0
2559 Male, age 74, both hemispheres 120.3
Reticular pontine nucleus, oral
nTPM: 123.8
2361 Male, age 74, both hemispheres 129.6
2012 Female, age 85, both hemispheres 129.1
1939 Male, age 80, both hemispheres 123.1
2167 Male, age 76, both hemispheres 119.9
2366 Female, age 91, both hemispheres 117.2
Reticulotegmental nucleus
nTPM: 123.7
2325 Male, age 76, both hemispheres 126.6
2452 Male, age 74, both hemispheres 126.3
2333 Male, age 80, both hemispheres 121.6
2322 Female, age 91, both hemispheres 120.2
Spinal trigeminal nucleus, oral
nTPM: 127.5
2164 Male, age 80, both hemispheres 128.9
2737 Female, age 85, both hemispheres 127.4
1978 Male, age 76, both hemispheres 126.3
Subcoeruleus area
nTPM: 124.9
2089 Male, age 76, left hemisphere 128.3
2323 Female, age 91, left hemisphere 128.0
2451 Male, age 74, both hemispheres 127.3
1958 Male, age 80, both hemispheres 127.1
2369 Female, age 85, left hemisphere 114.0
Superior olive
nTPM: 129.9
1875 Female, age 85, both hemispheres 135.0
2364 Male, age 74, right hemisphere 134.7
2020 Male, age 76, both hemispheres 131.9
2329 Male, age 80, right hemisphere 124.2
2561 Female, age 91, both hemispheres 123.6
Superior vestibular nucleus
nTPM: 123.6
2015 Male, age 80, both hemispheres 126.4
2061 Male, age 76, both hemispheres 122.6
2383 Male, age 74, both hemispheres 121.7
Ventral periolivary nuclei
nTPM: 132.2
2130 Female, age 85, both hemispheres 141.8
2165 Male, age 80, both hemispheres 134.3
2023 Male, age 76, both hemispheres 129.8
2794 Female, age 91, left hemisphere 123.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 124.5
1959 Male, age 76, both hemispheres 131.6
2449 Male, age 74, both hemispheres 128.5
2840 Female, age 85, both hemispheres 124.7
2161 Male, age 80, both hemispheres 124.1
2456 Female, age 91, both hemispheres 121.2
2359 Male, age 61, both hemispheres 116.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 65.0
FF:10182-103D2 60 years, female 73.9
FF:10165-103B3 76 years, female 56.0
Pons
Scaled Tags Per Million: 64.9
FF:10033-101E6 18-54 years, mixed 64.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.3
Pig sample Sample description nTPM
Pons
nTPM: 57.3
Samples: 4

Max nTPM: 79.7
Min nTPM: 38.1
Sample A Female 79.7
Sample B Female 38.1
Sample C Male 46.9
Sample D Male 64.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 4.1
69526791 Antisense, RP_050421_01_F05, Mouse strain C57BL/6J (56 days, male) 6.0
81600128 Antisense, RP_080306_04_E09, Mouse strain C57BL/6J (56 days, male) 2.3

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by the Knut & Alice Wallenberg Foundation.