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VPS50
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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4.4 nTPM
HPA:4.4 nTPM
GTEx:9.4 nTPM
FANTOM5:64.9 Scaled Tags Per Million
Pig:41.0 nTPM
Mouse:35.7 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA026679
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Hippocampus
nTPM: 4.2
1855 Male, age 76, left hemisphere 5.8
1911 Female, age 85, right hemisphere 4.8
1898 Male, age 80, left hemisphere 3.8
2148 Female, age 91, left hemisphere 3.6
2621 Female, age 67, right hemisphere 3.6
2529 Female, age 94, left hemisphere 3.5
Dentate gyrus
nTPM: 3.8
1927 Female, age 91, both hemispheres 5.1
2010 Male, age 76, both hemispheres 4.9
2528 Male, age 74, both hemispheres 3.5
2246 Female, age 85, both hemispheres 3.4
2531 Female, age 67, both hemispheres 3.2
2530 Female, age 94, left hemisphere 2.8
Entorhinal gyrus
nTPM: 3.6
2686 Male, age 75, right hemisphere 4.0
2613 Female, age 94, left hemisphere 3.8
2764 Male, age 80, right hemisphere 3.7
1938 Female, age 85, left hemisphere 3.6
1787 Male, age 76, left hemisphere 3.5
2117 Female, age 91, right hemisphere 2.9
Hippocampus, CA1
nTPM: 4.3
2749 Male, age 80, left hemisphere 5.3
1873 Female, age 85, both hemispheres 4.9
2045 Male, age 76, both hemispheres 4.0
2082 Female, age 91, right hemisphere 3.7
2527 Male, age 74, both hemispheres 3.5
Hippocampus, CA2
nTPM: 4.2
1963 Male, age 80, left hemisphere 6.4
1892 Male, age 76, both hemispheres 5.0
2113 Female, age 91, right hemisphere 3.7
2437 Female, age 94, left hemisphere 3.6
2249 Male, age 74, both hemispheres 3.4
1940 Female, age 85, left hemisphere 3.3
Hippocampus, CA3
nTPM: 4.3
2137 Male, age 80, left hemisphere 5.2
2620 Female, age 94, left hemisphere 4.5
1867 Male, age 76, both hemispheres 4.2
1891 Female, age 85, both hemispheres 4.1
2436 Male, age 74, both hemispheres 4.0
2861 Female, age 67, both hemispheres 3.7
Parahippocampal cortex
nTPM: 4.1
2693 Female, age 94, both hemispheres 5.0
1850 Male, age 80, both hemispheres 4.8
2018 Male, age 76, both hemispheres 4.8
1933 Female, age 85, both hemispheres 4.5
2532 Female, age 72, left hemisphere 4.4
1990 Female, age 91, right hemisphere 3.9
2245 Female, age 91, both hemispheres 3.8
2622 Female, age 67, right hemisphere 3.6
2692 Male, age 74, both hemispheres 3.4
2250 Female, age 67, right hemisphere 3.3
Perirhinal gyrus
nTPM: 4.4
2848 Male, age 76, right hemisphere 5.5
1847 Female, age 91, left hemisphere 4.5
1841 Female, age 85, right hemisphere 4.3
1794 Male, age 80, right hemisphere 4.1
2521 Female, age 94, right hemisphere 3.3
Subiculum
nTPM: 3.9
1977 Female, age 85, both hemispheres 5.2
1901 Male, age 80, both hemispheres 5.0
2729 Female, age 91, right hemisphere 4.1
2438 Female, age 94, left hemisphere 3.8
2619 Male, age 74, both hemispheres 2.9
2042 Male, age 76, both hemispheres 2.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.4
Samples: 197

Max nTPM: 21.6
Min nTPM: 3.1
Std nTPM: 3.7
Median nTPM: 8.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 21.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 20.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 20.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 20.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 19.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 18.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 17.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 17.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 17.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 16.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 16.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 16.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 15.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 15.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 15.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 15.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 15.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 15.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 15.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 15.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 15.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 15.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 14.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 14.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 13.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 13.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 13.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 13.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 13.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 13.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 13.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 12.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 12.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 12.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 12.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 12.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 12.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 12.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 12.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 12.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 12.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 11.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 11.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 11.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 11.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 11.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 11.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 11.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 11.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 11.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 11.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 11.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 11.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 11.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 11.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 11.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 10.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 10.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 10.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 10.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 10.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 10.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 10.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 10.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 10.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 10.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 10.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 10.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 10.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 10.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 10.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 10.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 10.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 9.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 9.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 9.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 9.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 9.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 9.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 9.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 9.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 9.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 9.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 9.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 9.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 9.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 9.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 8.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 8.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 8.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 8.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 8.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 8.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 8.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 8.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 8.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 8.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 8.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 8.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 8.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 8.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 8.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 8.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 8.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 8.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 8.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 8.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 8.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 8.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 8.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 8.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 8.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 8.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 8.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 7.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 7.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 7.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 7.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 7.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 7.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 7.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 7.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 7.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 7.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 7.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 7.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 7.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 7.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 7.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 7.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 7.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 7.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 7.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 7.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 7.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 7.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 7.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 7.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 7.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 7.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 7.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 7.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 7.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 6.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 6.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 6.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 6.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 6.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 6.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 6.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 6.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 6.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 6.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 6.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 6.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 6.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 6.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 6.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 6.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 6.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 6.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 6.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 6.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 6.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 5.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 5.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 5.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 5.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 5.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 5.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 5.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 5.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 5.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 5.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 5.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 5.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 5.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 5.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 5.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 5.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 5.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 5.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 4.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 4.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 4.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 4.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 4.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 4.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 4.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 4.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 4.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 4.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 4.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 3.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 3.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 3.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 3.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 64.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.9
FF:10169-103B7 60 years, female 84.7
FF:10153-102I9 76 years, female 45.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 41.0
Samples: 4

Max nTPM: 50.5
Min nTPM: 29.5
Sample A Female 50.5
Sample B Female 40.0
Sample C Male 44.1
Sample D Male 29.5
Entorhinal cortex
nTPM: 30.6
Samples: 4

Max nTPM: 38.1
Min nTPM: 25.1
Sample A Female 30.4
Sample B Female 38.1
Sample C Male 28.9
Sample D Male 25.1
Subiculum
nTPM: 29.6
Samples: 4

Max nTPM: 36.6
Min nTPM: 24.3
Sample A Female 36.6
Sample B Female 29.2
Sample C Male 24.3
Sample D Male 28.4
Ventral hippocampus
nTPM: 31.5
Samples: 4

Max nTPM: 39.7
Min nTPM: 24.1
Sample A Female 39.7
Sample B Female 26.7
Sample C Male 24.1
Sample D Male 35.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.4
Samples: 4

Max nTPM: 39.8
Min nTPM: 31.7
Sample A Male 31.9
Sample B Male 39.8
Sample C Female 34.2
Sample D Female 31.7
Hippocampal formation
nTPM: 35.7
Samples: 4

Max nTPM: 39.9
Min nTPM: 32.6
Sample A Male 39.9
Sample B Male 37.6
Sample C Female 32.7
Sample D Female 32.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
70474863 Antisense, RP_050623_01_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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