MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:31.3 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:56.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.3
2586 Male, age 75, left hemisphere 36.6
2411 Female, age 72, unknown 35.5
2019 Male, age 18, unknown 35.3
1870 Female, age 42, unknown 35.0
1833 Male, age 53, unknown 34.7
1830 Male, age 51, unknown 34.5
2666 Male, age 74, left hemisphere 34.4
2219 Male, age 76, both hemispheres 32.9
1827 Male, age 72, unknown 32.2
2828 Female, age 72, unknown 31.9
Dorsal raphe nucleus
nTPM: 33.5
1828 Male, age 53, unknown 35.1
2750 Male, age 76, both hemispheres 34.5
2016 Female, age 72, unknown 33.2
2047 Male, age 72, unknown 33.2
2298 Female, age 72, unknown 31.5
Inferior colliculus
nTPM: 32.4
1890 Male, age 53, unknown 33.2
2097 Female, age 72, unknown 33.0
1848 Female, age 42, unknown 32.8
2849 Male, age 72, unknown 30.4
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Pedunculopontine tegmental nucleus
nTPM: 32.9
2334 Male, age 80, both hemispheres 34.7
1921 Female, age 85, both hemispheres 33.1
2338 Male, age 61, both hemispheres 30.8
Periaquaductal grey, anterior
nTPM: 32.6
2502 Female, age 75, unknown 33.9
1947 Male, age 18, unknown 33.1
1795 Male, age 51, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 31.1
2464 Female, age 72, unknown 32.6
1831 Male, age 72, unknown 30.8
2850 Male, age 76, both hemispheres 30.7
1840 Male, age 53, unknown 30.3
Periaquaductal grey, lateral
nTPM: 29.6
2053 Male, age 18, unknown 30.2
2272 Male, age 74, both hemispheres 29.6
2140 Male, age 76, both hemispheres 29.1
Pretectal area
nTPM: 32.2
1817 Female, age 42, unknown 34.0
1815 Male, age 53, unknown 33.8
2007 Male, age 72, unknown 33.5
1816 Male, age 51, unknown 33.1
2667 Female, age 75, unknown 32.5
1944 Female, age 72, unknown 32.3
2407 Male, age 75, both hemispheres 31.7
2224 Female, age 72, unknown 31.6
2825 Male, age 18, unknown 31.1
2316 Male, age 76, right hemisphere 30.9
2273 Male, age 74, both hemispheres 30.1
Red nucleus
nTPM: 35.7
1821 Female, age 72, unknown 38.6
1954 Female, age 42, unknown 37.1
1904 Male, age 53, unknown 37.0
1865 Male, age 51, unknown 36.2
2503 Female, age 72, unknown 36.1
2227 Male, age 72, unknown 36.0
2769 Male, age 72, unknown 35.6
2785 Male, age 18, unknown 35.0
2584 Male, age 75, left hemisphere 34.8
2588 Male, age 74, left hemisphere 34.7
2823 Male, age 76, right hemisphere 34.0
2725 Female, age 75, unknown 33.1
Substantia nigra
nTPM: 35.7
2241 Male, age 72, unknown 39.0
1916 Female, age 42, unknown 38.8
1851 Male, age 51, unknown 36.8
2409 Female, age 72, unknown 35.8
2583 Male, age 75, right hemisphere 35.0
1941 Male, age 53, unknown 34.9
2699 Male, age 18, unknown 34.7
1889 Female, age 72, unknown 34.3
2665 Male, age 74, both hemispheres 34.3
2590 Female, age 75, unknown 33.2
Superior colliculus
nTPM: 33.0
2668 Female, age 75, unknown 36.1
1913 Female, age 42, unknown 33.6
2664 Male, age 75, both hemispheres 33.4
1995 Male, age 72, unknown 33.2
2261 Male, age 18, unknown 33.2
1839 Male, age 51, unknown 32.8
2087 Female, age 72, unknown 32.7
2587 Male, age 74, left hemisphere 32.7
1895 Male, age 76, right hemisphere 31.4
1796 Male, age 53, unknown 30.8
Ventral tegmental area
nTPM: 35.0
2410 Female, age 72, unknown 36.3
2218 Male, age 76, both hemispheres 36.1
2223 Female, age 72, unknown 35.7
1915 Female, age 42, unknown 34.6
1942 Male, age 51, unknown 34.2
2021 Male, age 53, unknown 33.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 139

Max nTPM: 51.8
Min nTPM: 20.2
Std nTPM: 6.1
Median nTPM: 30.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 51.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 45.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 45.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 44.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 44.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 44.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 44.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 43.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 43.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.7
FF:10158-103A5 76 years, female 66.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Midbrain
nTPM: 4.2
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.9
Sample A Female 4.0
Sample B Female 3.9
Sample C Male 4.6
Sample D Male 4.2
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 4.1
Min nTPM: 3.5
Sample B Female 4.1
Sample C Male 3.5
Sample D Male 3.9
Substantia nigra
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.0
Sample C Male 3.9
Sample D Male 4.8
Superior colliculi
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 3.7
Sample C Male 4.5
Sample D Male 3.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.3
Samples: 4

Max nTPM: 57.9
Min nTPM: 54.6
Sample A Male 54.6
Sample B Male 57.9
Sample C Female 57.8
Sample D Female 54.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67765730 Antisense, RP_040916_01_G03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.