MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA Brain:35.7 nTPM
GTEx:30.4 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:56.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
2586 Male, age 75, left hemisphere 38.1
2411 Female, age 72, unknown 34.7
2019 Male, age 18, unknown 34.6
1870 Female, age 42, unknown 33.4
1833 Male, age 53, unknown 32.9
2666 Male, age 74, left hemisphere 32.9
1830 Male, age 51, unknown 32.4
2219 Male, age 76, both hemispheres 28.9
1827 Male, age 72, unknown 28.0
2828 Female, age 72, unknown 27.1
Dorsal raphe nucleus
nTPM: 31.0
1828 Male, age 53, unknown 34.3
2750 Male, age 76, both hemispheres 32.6
2016 Female, age 72, unknown 30.6
2047 Male, age 72, unknown 30.5
2298 Female, age 72, unknown 27.1
Inferior colliculus
nTPM: 27.9
1890 Male, age 53, unknown 29.7
2097 Female, age 72, unknown 29.5
1848 Female, age 42, unknown 28.8
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Periaquaductal grey, anterior
nTPM: 29.2
2502 Female, age 75, unknown 32.0
1947 Male, age 18, unknown 30.2
1795 Male, age 51, unknown 25.3
Periaquaductal grey, dorsal
nTPM: 25.5
2464 Female, age 72, unknown 28.5
1831 Male, age 72, unknown 24.8
2850 Male, age 76, both hemispheres 24.8
1840 Male, age 53, unknown 24.1
Periaquaductal grey, lateral
nTPM: 22.4
2053 Male, age 18, unknown 23.4
2272 Male, age 74, both hemispheres 22.2
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 28.0
1817 Female, age 42, unknown 31.8
1815 Male, age 53, unknown 31.3
2007 Male, age 72, unknown 31.3
1816 Male, age 51, unknown 30.2
2667 Female, age 75, unknown 28.3
1944 Female, age 72, unknown 27.9
2224 Female, age 72, unknown 26.8
2407 Male, age 75, both hemispheres 26.5
2825 Male, age 18, unknown 25.4
2316 Male, age 76, right hemisphere 25.1
2273 Male, age 74, both hemispheres 23.5
Red nucleus
nTPM: 34.8
1821 Female, age 72, unknown 41.1
1904 Male, age 53, unknown 37.5
1954 Female, age 42, unknown 37.2
1865 Male, age 51, unknown 36.0
2503 Female, age 72, unknown 35.6
2227 Male, age 72, unknown 35.1
2769 Male, age 72, unknown 34.4
2584 Male, age 75, left hemisphere 33.5
2785 Male, age 18, unknown 33.5
2588 Male, age 74, left hemisphere 32.8
2823 Male, age 76, right hemisphere 31.2
2725 Female, age 75, unknown 29.6
Substantia nigra
nTPM: 35.7
1916 Female, age 42, unknown 43.7
2241 Male, age 72, unknown 43.6
1851 Male, age 51, unknown 38.1
2409 Female, age 72, unknown 36.0
1941 Male, age 53, unknown 34.2
2583 Male, age 75, right hemisphere 33.6
2699 Male, age 18, unknown 33.2
2665 Male, age 74, both hemispheres 32.9
1889 Female, age 72, unknown 32.2
2590 Female, age 75, unknown 29.7
Superior colliculus
nTPM: 29.4
2668 Female, age 75, unknown 36.7
2664 Male, age 75, both hemispheres 30.9
1913 Female, age 42, unknown 30.6
2261 Male, age 18, unknown 30.4
1995 Male, age 72, unknown 29.4
1839 Male, age 51, unknown 28.9
2587 Male, age 74, left hemisphere 28.8
2087 Female, age 72, unknown 28.6
1895 Male, age 76, right hemisphere 25.5
1796 Male, age 53, unknown 24.8
Ventral tegmental area
nTPM: 33.8
2410 Female, age 72, unknown 36.4
2218 Male, age 76, both hemispheres 36.2
2223 Female, age 72, unknown 35.1
1915 Female, age 42, unknown 33.0
1942 Male, age 51, unknown 32.2
2021 Male, age 53, unknown 29.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 139

Max nTPM: 50.2
Min nTPM: 19.7
Std nTPM: 5.9
Median nTPM: 29.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 44.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 44.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 43.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 43.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 43.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 43.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 42.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 42.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 42.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.3
FF:10158-103A5 76 years, female 66.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.5
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 6.6
Sample C Male 6.4
Sample D Male 8.0
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 6.5
Sample C Male 7.0
Sample D Male 6.8
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 6.9
Min nTPM: 6.0
Sample B Female 6.9
Sample C Male 6.0
Sample D Male 6.8
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 6.3
Sample C Male 7.2
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.3
Samples: 4

Max nTPM: 57.9
Min nTPM: 54.7
Sample A Male 54.7
Sample B Male 57.9
Sample C Female 57.8
Sample D Female 54.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67765730 Antisense, RP_040916_01_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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