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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA:37.6 nTPM
GTEx:31.5 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:56.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2586 Male, age 75, left hemisphere 38.4
2019 Male, age 18, unknown 37.7
2411 Female, age 72, unknown 37.2
1870 Female, age 42, unknown 37.1
1833 Male, age 53, unknown 36.5
1830 Male, age 51, unknown 36.3
2666 Male, age 74, left hemisphere 36.0
2219 Male, age 76, both hemispheres 34.9
1827 Male, age 72, unknown 34.2
2828 Female, age 72, unknown 33.9
Dorsal raphe nucleus
nTPM: 35.1
1828 Male, age 53, unknown 36.9
2750 Male, age 76, both hemispheres 36.4
2408 Male, age 75, both hemispheres 36.1
2047 Male, age 72, unknown 35.2
2016 Female, age 72, unknown 35.1
2304 Female, age 72, unknown 34.9
2298 Female, age 72, unknown 33.3
2593 Female, age 75, unknown 33.0
Inferior colliculus
nTPM: 34.1
2385 Female, age 72, unknown 35.3
1820 Female, age 72, unknown 35.1
1848 Female, age 42, unknown 35.0
1890 Male, age 53, unknown 35.0
2097 Female, age 72, unknown 34.8
2759 Female, age 72, unknown 34.1
2849 Male, age 72, unknown 32.4
1906 Male, age 76, both hemispheres 31.4
Median raphe nucleus
nTPM: 35.5
2225 Female, age 72, midline 36.6
2501 Female, age 75, midline 36.0
2129 Male, age 18, midline 35.7
2317 Male, age 75, midline 35.4
2220 Male, age 76, midline 33.9
Pedunculopontine tegmental nucleus
nTPM: 34.3
2257 Male, age 80, both hemispheres 35.9
1921 Female, age 85, both hemispheres 34.6
1919 Male, age 76, both hemispheres 33.5
2705 Male, age 61, both hemispheres 33.3
Periaquaductal grey, anterior
nTPM: 34.9
2502 Female, age 75, unknown 36.5
1947 Male, age 18, unknown 35.4
1795 Male, age 51, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 33.1
1813 Female, age 42, unknown 34.8
2464 Female, age 72, unknown 34.4
1874 Male, age 51, unknown 33.6
1814 Female, age 72, unknown 33.3
1831 Male, age 72, unknown 32.8
2850 Male, age 76, both hemispheres 32.6
1840 Male, age 53, unknown 32.1
2500 Male, age 75, right hemisphere 31.4
Periaquaductal grey, lateral
nTPM: 33.3
2319 Male, age 74, both hemispheres 36.4
2053 Male, age 18, unknown 32.4
2140 Male, age 76, both hemispheres 31.1
Pretectal area
nTPM: 34.4
1817 Female, age 42, unknown 36.1
2318 Male, age 74, both hemispheres 35.9
1815 Male, age 53, unknown 35.5
2007 Male, age 72, unknown 35.5
2667 Female, age 75, unknown 35.1
1816 Male, age 51, unknown 34.9
1944 Female, age 72, unknown 34.2
2407 Male, age 75, both hemispheres 33.5
2825 Male, age 18, unknown 33.4
2224 Female, age 72, unknown 33.3
2316 Male, age 76, right hemisphere 32.9
2754 Male, age 76, right hemisphere 32.2
Red nucleus
nTPM: 37.6
1821 Female, age 72, unknown 40.5
1954 Female, age 42, unknown 39.2
1904 Male, age 53, unknown 38.7
1865 Male, age 51, unknown 37.9
2227 Male, age 72, unknown 37.9
2503 Female, age 72, unknown 37.8
2769 Male, age 72, unknown 37.6
2785 Male, age 18, unknown 37.3
2584 Male, age 75, left hemisphere 36.6
2588 Male, age 74, left hemisphere 36.2
2823 Male, age 76, right hemisphere 36.0
2725 Female, age 75, unknown 35.8
Substantia nigra
nTPM: 37.1
1916 Female, age 42, unknown 40.9
2241 Male, age 72, unknown 40.9
1851 Male, age 51, unknown 38.5
2409 Female, age 72, unknown 37.5
2699 Male, age 18, unknown 37.0
2583 Male, age 75, right hemisphere 36.8
1941 Male, age 53, unknown 36.6
1889 Female, age 72, unknown 36.2
2665 Male, age 74, both hemispheres 35.9
2590 Female, age 75, unknown 35.8
1786 Male, age 76, right hemisphere 32.2
Superior colliculus
nTPM: 34.9
2668 Female, age 75, unknown 38.8
1913 Female, age 42, unknown 35.8
2261 Male, age 18, unknown 35.5
1995 Male, age 72, unknown 35.2
2664 Male, age 75, both hemispheres 35.2
1839 Male, age 51, unknown 34.6
2087 Female, age 72, unknown 34.6
2587 Male, age 74, left hemisphere 34.4
2739 Male, age 18, unknown 34.0
1895 Male, age 76, right hemisphere 33.4
1796 Male, age 53, unknown 32.6
Ventral tegmental area
nTPM: 36.3
2218 Male, age 76, both hemispheres 38.1
2410 Female, age 72, unknown 38.0
2223 Female, age 72, unknown 37.6
1915 Female, age 42, unknown 36.8
2585 Male, age 75, both hemispheres 36.2
1942 Male, age 51, unknown 36.0
1918 Male, age 72, unknown 35.3
2589 Male, age 74, both hemispheres 35.3
2021 Male, age 53, unknown 34.9
2592 Female, age 75, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.5
Samples: 139

Max nTPM: 52.3
Min nTPM: 20.3
Std nTPM: 6.2
Median nTPM: 30.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 46.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 45.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 44.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 44.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 44.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 44.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 43.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.7
FF:10158-103A5 76 years, female 66.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Midbrain
nTPM: 4.2
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.9
Sample A Female 4.0
Sample B Female 3.9
Sample C Male 4.6
Sample D Male 4.2
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 4.1
Min nTPM: 3.5
Sample B Female 4.1
Sample C Male 3.5
Sample D Male 3.9
Substantia nigra
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.0
Sample C Male 3.9
Sample D Male 4.8
Superior colliculi
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 3.7
Sample C Male 4.5
Sample D Male 3.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.3
Samples: 4

Max nTPM: 57.9
Min nTPM: 54.6
Sample A Male 54.6
Sample B Male 57.9
Sample C Female 57.8
Sample D Female 54.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67765730 Antisense, RP_040916_01_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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