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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:31.3 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:56.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.3
2586 Male, age 75, left hemisphere 36.6
2411 Female, age 72, unknown 35.5
2019 Male, age 18, unknown 35.3
1870 Female, age 42, unknown 35.0
1833 Male, age 53, unknown 34.7
1830 Male, age 51, unknown 34.5
2666 Male, age 74, left hemisphere 34.4
2219 Male, age 76, both hemispheres 32.9
1827 Male, age 72, unknown 32.2
2828 Female, age 72, unknown 31.9
Dorsal raphe nucleus
nTPM: 33.5
1828 Male, age 53, unknown 35.1
2750 Male, age 76, both hemispheres 34.5
2016 Female, age 72, unknown 33.2
2047 Male, age 72, unknown 33.2
2298 Female, age 72, unknown 31.5
Inferior colliculus
nTPM: 32.4
1890 Male, age 53, unknown 33.2
2097 Female, age 72, unknown 33.0
1848 Female, age 42, unknown 32.8
2849 Male, age 72, unknown 30.4
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Pedunculopontine tegmental nucleus
nTPM: 32.9
2334 Male, age 80, both hemispheres 34.7
1921 Female, age 85, both hemispheres 33.1
2338 Male, age 61, both hemispheres 30.8
Periaquaductal grey, anterior
nTPM: 32.6
2502 Female, age 75, unknown 33.9
1947 Male, age 18, unknown 33.1
1795 Male, age 51, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 31.1
2464 Female, age 72, unknown 32.6
1831 Male, age 72, unknown 30.8
2850 Male, age 76, both hemispheres 30.7
1840 Male, age 53, unknown 30.3
Periaquaductal grey, lateral
nTPM: 29.6
2053 Male, age 18, unknown 30.2
2272 Male, age 74, both hemispheres 29.6
2140 Male, age 76, both hemispheres 29.1
Pretectal area
nTPM: 32.2
1817 Female, age 42, unknown 34.0
1815 Male, age 53, unknown 33.8
2007 Male, age 72, unknown 33.5
1816 Male, age 51, unknown 33.1
2667 Female, age 75, unknown 32.5
1944 Female, age 72, unknown 32.3
2407 Male, age 75, both hemispheres 31.7
2224 Female, age 72, unknown 31.6
2825 Male, age 18, unknown 31.1
2316 Male, age 76, right hemisphere 30.9
2273 Male, age 74, both hemispheres 30.1
Red nucleus
nTPM: 35.7
1821 Female, age 72, unknown 38.6
1954 Female, age 42, unknown 37.1
1904 Male, age 53, unknown 37.0
1865 Male, age 51, unknown 36.2
2503 Female, age 72, unknown 36.1
2227 Male, age 72, unknown 36.0
2769 Male, age 72, unknown 35.6
2785 Male, age 18, unknown 35.0
2584 Male, age 75, left hemisphere 34.8
2588 Male, age 74, left hemisphere 34.7
2823 Male, age 76, right hemisphere 34.0
2725 Female, age 75, unknown 33.1
Substantia nigra
nTPM: 35.7
2241 Male, age 72, unknown 39.0
1916 Female, age 42, unknown 38.8
1851 Male, age 51, unknown 36.8
2409 Female, age 72, unknown 35.8
2583 Male, age 75, right hemisphere 35.0
1941 Male, age 53, unknown 34.9
2699 Male, age 18, unknown 34.7
1889 Female, age 72, unknown 34.3
2665 Male, age 74, both hemispheres 34.3
2590 Female, age 75, unknown 33.2
Superior colliculus
nTPM: 33.0
2668 Female, age 75, unknown 36.1
1913 Female, age 42, unknown 33.6
2664 Male, age 75, both hemispheres 33.4
1995 Male, age 72, unknown 33.2
2261 Male, age 18, unknown 33.2
1839 Male, age 51, unknown 32.8
2087 Female, age 72, unknown 32.7
2587 Male, age 74, left hemisphere 32.7
1895 Male, age 76, right hemisphere 31.4
1796 Male, age 53, unknown 30.8
Ventral tegmental area
nTPM: 35.0
2410 Female, age 72, unknown 36.3
2218 Male, age 76, both hemispheres 36.1
2223 Female, age 72, unknown 35.7
1915 Female, age 42, unknown 34.6
1942 Male, age 51, unknown 34.2
2021 Male, age 53, unknown 33.1

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 139

Max nTPM: 51.8
Min nTPM: 20.2
Std nTPM: 6.1
Median nTPM: 30.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 51.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 45.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 45.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 44.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 44.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 44.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 44.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 43.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 43.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 41.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 41.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 40.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 38.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 38.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 37.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 37.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 36.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 36.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 35.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 35.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 35.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 35.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 35.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 34.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 34.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 34.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 34.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 34.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 34.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 34.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 34.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 34.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 34.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 34.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 33.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 33.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 33.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 33.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 33.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 33.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 33.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 32.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 32.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 32.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 32.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 31.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 31.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 31.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 31.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 31.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 31.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 31.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 31.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 31.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 30.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 30.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 30.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 30.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 30.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 30.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 29.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 29.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 29.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 29.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 29.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 29.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 29.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 29.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 29.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 29.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 28.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 28.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 28.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 28.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 28.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 28.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 28.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 28.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 28.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 27.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 27.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 27.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 27.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 27.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 27.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 27.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 27.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 27.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 27.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 27.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 27.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 27.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.0
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 26.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 26.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 26.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 26.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 26.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 26.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 26.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 26.2
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 26.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 26.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 26.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 26.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 25.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 25.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 25.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 25.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 24.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 24.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 24.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 24.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 24.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 23.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 23.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 23.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 23.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 23.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 23.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 22.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 22.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 22.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 20.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 20.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.7
FF:10158-103A5 76 years, female 66.7

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4.2
Pig sample Sample description nTPM
Midbrain
nTPM: 4.2
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.9
Sample A Female 4.0
Sample B Female 3.9
Sample C Male 4.6
Sample D Male 4.2
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 4.1
Min nTPM: 3.5
Sample B Female 4.1
Sample C Male 3.5
Sample D Male 3.9
Substantia nigra
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.0
Sample C Male 3.9
Sample D Male 4.8
Superior colliculi
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 3.7
Sample C Male 4.5
Sample D Male 3.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.3
Samples: 4

Max nTPM: 57.9
Min nTPM: 54.6
Sample A Male 54.6
Sample B Male 57.9
Sample C Female 57.8
Sample D Female 54.9

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67765730 Antisense, RP_040916_01_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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