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ETV1
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TISSUE HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
96.495
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:10.5 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:50.7 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA068389
Hippocampal formation mean intensity 96.495
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 70.328
Molecular layer of the dentate gyrus 60.805
Granular dentate gyrus 85.751
CA1 - oriens layer 66.705
CA1 - pyramidal layer 92.434
CA1 - radiatum layer 70.994
CA2 - oriens layer 62.365
CA2 - pyramidal layer 96.495
CA2 - radiatum layer 72.468
CA3 - oriens layer 82.980
CA3 - pyramidal layer 85.505
CA3 - radiatum layer 77.013
Stratum lucidum 61.955
Lacunosum moleculare 46.668
Subiculum 41.625

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Hippocampus
nTPM: 8.0
1898 Male, age 80, left hemisphere 15.2
2529 Female, age 94, left hemisphere 11.0
1911 Female, age 85, right hemisphere 8.3
2621 Female, age 67, right hemisphere 7.4
1855 Male, age 76, left hemisphere 3.7
2148 Female, age 91, left hemisphere 2.3
Dentate gyrus
nTPM: 4.0
2246 Female, age 85, both hemispheres 11.0
2531 Female, age 67, both hemispheres 3.3
1927 Female, age 91, both hemispheres 3.0
2528 Male, age 74, both hemispheres 3.0
2530 Female, age 94, left hemisphere 2.0
2010 Male, age 76, both hemispheres 1.8
Entorhinal gyrus
nTPM: 11.0
1938 Female, age 85, left hemisphere 16.6
2613 Female, age 94, left hemisphere 13.7
2764 Male, age 80, right hemisphere 11.5
1787 Male, age 76, left hemisphere 10.7
2686 Male, age 75, right hemisphere 9.1
2117 Female, age 91, right hemisphere 4.6
Hippocampus, CA1
nTPM: 6.0
2527 Male, age 74, both hemispheres 9.2
2749 Male, age 80, left hemisphere 7.4
2082 Female, age 91, right hemisphere 7.1
1873 Female, age 85, both hemispheres 4.7
2045 Male, age 76, both hemispheres 1.8
Hippocampus, CA2
nTPM: 10.4
1892 Male, age 76, both hemispheres 36.2
2437 Female, age 94, left hemisphere 9.7
2113 Female, age 91, right hemisphere 6.2
2249 Male, age 74, both hemispheres 5.1
1940 Female, age 85, left hemisphere 2.9
1963 Male, age 80, left hemisphere 2.1
Hippocampus, CA3
nTPM: 11.7
1867 Male, age 76, both hemispheres 28.3
1891 Female, age 85, both hemispheres 20.4
2137 Male, age 80, left hemisphere 9.4
2436 Male, age 74, both hemispheres 7.0
2861 Female, age 67, both hemispheres 3.8
2620 Female, age 94, left hemisphere 1.1
Parahippocampal cortex
nTPM: 12.2
1850 Male, age 80, both hemispheres 17.8
1933 Female, age 85, both hemispheres 17.8
2250 Female, age 67, right hemisphere 14.2
1990 Female, age 91, right hemisphere 14.0
2692 Male, age 74, both hemispheres 11.2
2245 Female, age 91, both hemispheres 11.0
2018 Male, age 76, both hemispheres 10.0
2693 Female, age 94, both hemispheres 9.7
2622 Female, age 67, right hemisphere 8.9
2532 Female, age 72, left hemisphere 7.5
Perirhinal gyrus
nTPM: 14.6
1847 Female, age 91, left hemisphere 29.0
1841 Female, age 85, right hemisphere 11.9
2848 Male, age 76, right hemisphere 11.9
2521 Female, age 94, right hemisphere 10.6
1794 Male, age 80, right hemisphere 9.8
Subiculum
nTPM: 12.8
2438 Female, age 94, left hemisphere 20.9
1901 Male, age 80, both hemispheres 20.5
1977 Female, age 85, both hemispheres 16.1
2619 Male, age 74, both hemispheres 9.9
2042 Male, age 76, both hemispheres 4.6
2729 Female, age 91, right hemisphere 4.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.5
Samples: 197

Max nTPM: 56.5
Min nTPM: 2.2
Std nTPM: 7.7
Median nTPM: 8.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 56.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 48.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 48.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 42.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 40.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 37.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 30.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 27.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 24.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 22.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 21.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 21.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 20.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 20.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 18.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 18.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 18.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 17.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 16.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 16.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 16.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 16.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 15.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 15.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 15.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 15.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 15.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 15.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 15.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 14.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 13.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 13.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 13.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 13.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 13.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 13.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 13.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 13.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 13.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 12.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 12.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 12.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 12.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 12.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 12.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 12.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 12.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 12.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 12.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 11.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 11.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 11.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 11.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 11.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 11.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 11.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 11.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 11.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 11.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 10.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 10.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 10.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 10.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 10.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 10.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 10.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 10.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 10.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 10.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 10.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 10.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 9.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 9.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 9.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 9.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 9.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 9.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 9.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 9.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 9.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 9.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 9.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 9.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 9.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 9.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 9.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 9.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 9.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 9.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 9.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 8.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 8.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 8.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 8.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 8.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 8.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 8.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 8.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 8.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 8.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 8.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 8.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 8.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 8.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 8.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 8.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 8.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 8.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 8.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 8.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 8.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 8.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 8.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 8.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 7.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 7.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 7.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 7.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 7.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 7.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 7.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 7.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 7.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 7.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 7.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 7.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 7.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 7.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 7.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 7.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 7.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 7.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 7.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 7.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 7.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 7.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 7.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 7.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 7.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 7.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 7.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 6.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 6.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 6.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 6.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 6.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 6.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 6.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 6.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 6.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 6.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 6.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 6.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 6.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 6.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 6.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 6.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 6.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 6.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 5.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 5.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 5.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 5.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 5.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 5.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 5.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 5.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 5.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 5.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 5.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 5.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 5.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 5.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 4.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 4.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 4.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 4.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 4.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 4.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 4.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 4.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 4.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 4.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 4.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 4.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 4.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 4.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 3.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 3.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 3.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 3.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 3.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 3.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 3.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 2.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 2.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 2.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.5
FF:10169-103B7 60 years, female 60.6
FF:10153-102I9 76 years, female 48.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 39.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 35.5
Samples: 4

Max nTPM: 77.7
Min nTPM: 15.0
Sample A Female 26.7
Sample B Female 22.4
Sample C Male 77.7
Sample D Male 15.0
Entorhinal cortex
nTPM: 20.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 19.3
Sample A Female 19.5
Sample B Female 19.3
Sample C Male 21.6
Sample D Male 22.6
Subiculum
nTPM: 33.0
Samples: 4

Max nTPM: 40.0
Min nTPM: 26.5
Sample A Female 32.1
Sample B Female 26.5
Sample C Male 40.0
Sample D Male 33.5
Ventral hippocampus
nTPM: 39.2
Samples: 4

Max nTPM: 58.4
Min nTPM: 26.7
Sample A Female 35.7
Sample B Female 26.7
Sample C Male 58.4
Sample D Male 35.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.7
Samples: 4

Max nTPM: 58.3
Min nTPM: 38.2
Sample A Male 58.3
Sample B Male 38.2
Sample C Female 50.3
Sample D Female 56.0
Hippocampal formation
nTPM: 41.2
Samples: 4

Max nTPM: 48.7
Min nTPM: 35.6
Sample A Male 42.7
Sample B Male 48.7
Sample C Female 35.6
Sample D Female 37.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69201600 Antisense, RP_050317_03_C03, Mouse strain C57BL/6J (56 days, male) 4.7
72119595 Antisense, RP_051017_04_A09, Mouse strain C57BL/6J (56 days, male) 3.4
73512203 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 3.1
70919573 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 3.0

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