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HIPPOCAMPAL FORMATION - Expression summary
Mouse brain, Intensity
Hippocampal formationi		 96.495
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA:14.1 nTPM
GTEx:10.6 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:50.7 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - Mouse brain profilei, antibody HPA068389
Hippocampal formation mean intensity 96.495
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 70.328
Molecular layer of the dentate gyrus 60.805
Granular dentate gyrus 85.751
CA1 - oriens layer 66.705
CA1 - pyramidal layer 92.434
CA1 - radiatum layer 70.994
CA2 - oriens layer 62.365
CA2 - pyramidal layer 96.495
CA2 - radiatum layer 72.468
CA3 - oriens layer 82.980
CA3 - pyramidal layer 85.505
CA3 - radiatum layer 77.013
Stratum lucidum 61.955
Lacunosum moleculare 46.668
Subiculum 41.625

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Hippocampus
nTPM: 9.1
1898 Male, age 80, left hemisphere 15.6
2860 Male, age 74, right hemisphere 12.6
2529 Female, age 94, left hemisphere 10.9
1911 Female, age 85, right hemisphere 8.8
2621 Female, age 67, right hemisphere 8.0
1855 Male, age 76, left hemisphere 4.3
2148 Female, age 91, left hemisphere 3.3
Dentate gyrus
nTPM: 4.7
2246 Female, age 85, both hemispheres 11.3
1927 Female, age 91, both hemispheres 4.1
2531 Female, age 67, both hemispheres 4.0
2528 Male, age 74, both hemispheres 3.5
2010 Male, age 76, both hemispheres 2.5
2530 Female, age 94, left hemisphere 2.5
Entorhinal gyrus
nTPM: 11.4
1938 Female, age 85, left hemisphere 16.7
2613 Female, age 94, left hemisphere 13.5
2764 Male, age 80, right hemisphere 11.9
1787 Male, age 76, left hemisphere 11.1
2686 Male, age 75, right hemisphere 9.4
2117 Female, age 91, right hemisphere 5.7
Hippocampus, CA1
nTPM: 7.0
2527 Male, age 74, both hemispheres 9.5
2343 Female, age 94, left hemisphere 8.6
2082 Female, age 91, right hemisphere 8.1
2749 Male, age 80, left hemisphere 8.0
1873 Female, age 85, both hemispheres 5.3
2045 Male, age 76, both hemispheres 2.5
Hippocampus, CA2
nTPM: 11.7
1892 Male, age 76, both hemispheres 35.7
2342 Male, age 74, both hemispheres 11.2
2437 Female, age 94, left hemisphere 9.7
2113 Female, age 91, right hemisphere 7.3
1940 Female, age 85, left hemisphere 3.6
1963 Male, age 80, left hemisphere 2.8
Hippocampus, CA3
nTPM: 12.0
1867 Male, age 76, both hemispheres 28.1
1891 Female, age 85, both hemispheres 20.3
2137 Male, age 80, left hemisphere 9.9
2436 Male, age 74, both hemispheres 7.4
2861 Female, age 67, both hemispheres 4.5
2620 Female, age 94, left hemisphere 1.7
Parahippocampal cortex
nTPM: 13.2
1850 Male, age 80, both hemispheres 18.1
2718 Female, age 67, right hemisphere 18.1
1933 Female, age 85, both hemispheres 17.9
1990 Female, age 91, right hemisphere 15.1
2245 Female, age 91, both hemispheres 12.1
2692 Male, age 74, both hemispheres 11.3
2018 Male, age 76, both hemispheres 10.5
2532 Female, age 72, left hemisphere 9.8
2693 Female, age 94, both hemispheres 9.8
2622 Female, age 67, right hemisphere 9.5
Perirhinal gyrus
nTPM: 14.1
1847 Female, age 91, left hemisphere 30.1
2848 Male, age 76, right hemisphere 12.3
1841 Female, age 85, right hemisphere 12.2
2521 Female, age 94, right hemisphere 10.6
1794 Male, age 80, right hemisphere 10.3
2519 Male, age 75, right hemisphere 9.0
Subiculum
nTPM: 12.2
1901 Male, age 80, both hemispheres 20.7
2438 Female, age 94, left hemisphere 20.2
1977 Female, age 85, both hemispheres 16.2
2619 Male, age 74, both hemispheres 10.1
2702 Female, age 67, right hemisphere 7.6
2729 Female, age 91, right hemisphere 5.6
2042 Male, age 76, both hemispheres 5.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.6
Samples: 197

Max nTPM: 56.9
Min nTPM: 2.2
Std nTPM: 7.8
Median nTPM: 8.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 56.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 49.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 48.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 43.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 40.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 37.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 30.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 27.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 24.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 22.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 22.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.5
FF:10169-103B7 60 years, female 60.6
FF:10153-102I9 76 years, female 48.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 35.5
Samples: 4

Max nTPM: 77.7
Min nTPM: 15.0
Sample A Female 26.7
Sample B Female 22.4
Sample C Male 77.7
Sample D Male 15.0
Entorhinal cortex
nTPM: 20.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 19.3
Sample A Female 19.5
Sample B Female 19.3
Sample C Male 21.6
Sample D Male 22.6
Subiculum
nTPM: 33.0
Samples: 4

Max nTPM: 40.0
Min nTPM: 26.5
Sample A Female 32.1
Sample B Female 26.5
Sample C Male 40.0
Sample D Male 33.5
Ventral hippocampus
nTPM: 39.2
Samples: 4

Max nTPM: 58.4
Min nTPM: 26.7
Sample A Female 35.7
Sample B Female 26.7
Sample C Male 58.4
Sample D Male 35.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 50.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.7
Samples: 4

Max nTPM: 58.3
Min nTPM: 38.2
Sample A Male 58.3
Sample B Male 38.2
Sample C Female 50.3
Sample D Female 56.0
Hippocampal formation
nTPM: 41.2
Samples: 4

Max nTPM: 48.7
Min nTPM: 35.6
Sample A Male 42.7
Sample B Male 48.7
Sample C Female 35.6
Sample D Female 37.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69201600 Antisense, RP_050317_03_C03, Mouse strain C57BL/6J (56 days, male) 4.7
72119595 Antisense, RP_051017_04_A09, Mouse strain C57BL/6J (56 days, male) 3.4
73512203 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 3.1
70919573 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 3.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.