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PAF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:34.0 nTPM
HPA:34.0 nTPM
GTEx:43.2 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:37.9 nTPM
Allen mouse:29.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041875
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Hippocampus
nTPM: 33.4
2529 Female, age 94, left hemisphere 36.6
2860 Male, age 74, right hemisphere 34.3
2148 Female, age 91, left hemisphere 34.2
2621 Female, age 67, right hemisphere 33.9
1855 Male, age 76, left hemisphere 33.1
1898 Male, age 80, left hemisphere 31.0
1911 Female, age 85, right hemisphere 30.9
Dentate gyrus
nTPM: 31.9
2530 Female, age 94, left hemisphere 34.6
2246 Female, age 85, both hemispheres 33.8
2531 Female, age 67, both hemispheres 33.8
2010 Male, age 76, both hemispheres 31.5
2528 Male, age 74, both hemispheres 29.4
1927 Female, age 91, both hemispheres 28.2
Entorhinal gyrus
nTPM: 32.3
2764 Male, age 80, right hemisphere 33.9
2686 Male, age 75, right hemisphere 33.6
2117 Female, age 91, right hemisphere 33.2
2613 Female, age 94, left hemisphere 31.4
1938 Female, age 85, left hemisphere 30.9
1787 Male, age 76, left hemisphere 30.6
Hippocampus, CA1
nTPM: 32.3
2343 Female, age 94, left hemisphere 35.7
2749 Male, age 80, left hemisphere 32.2
2527 Male, age 74, both hemispheres 32.0
2082 Female, age 91, right hemisphere 31.8
2045 Male, age 76, both hemispheres 31.3
1873 Female, age 85, both hemispheres 30.8
Hippocampus, CA2
nTPM: 30.9
1940 Female, age 85, left hemisphere 32.7
2113 Female, age 91, right hemisphere 31.6
1892 Male, age 76, both hemispheres 31.4
2437 Female, age 94, left hemisphere 31.2
1963 Male, age 80, left hemisphere 29.2
2342 Male, age 74, both hemispheres 29.1
Hippocampus, CA3
nTPM: 31.5
2620 Female, age 94, left hemisphere 35.1
1891 Female, age 85, both hemispheres 32.4
2137 Male, age 80, left hemisphere 30.9
2861 Female, age 67, both hemispheres 30.9
1867 Male, age 76, both hemispheres 30.2
2436 Male, age 74, both hemispheres 29.8
Parahippocampal cortex
nTPM: 31.9
2692 Male, age 74, both hemispheres 34.5
2532 Female, age 72, left hemisphere 33.3
2622 Female, age 67, right hemisphere 32.8
2245 Female, age 91, both hemispheres 32.6
1990 Female, age 91, right hemisphere 31.9
2718 Female, age 67, right hemisphere 31.9
1933 Female, age 85, both hemispheres 31.2
1850 Male, age 80, both hemispheres 30.9
2693 Female, age 94, both hemispheres 30.6
2018 Male, age 76, both hemispheres 29.4
Perirhinal gyrus
nTPM: 31.4
2519 Male, age 75, right hemisphere 34.9
1794 Male, age 80, right hemisphere 31.6
2848 Male, age 76, right hemisphere 31.0
1841 Female, age 85, right hemisphere 30.9
2521 Female, age 94, right hemisphere 30.6
1847 Female, age 91, left hemisphere 29.4
Subiculum
nTPM: 34.0
2438 Female, age 94, left hemisphere 37.8
2042 Male, age 76, both hemispheres 35.8
1901 Male, age 80, both hemispheres 34.1
2619 Male, age 74, both hemispheres 33.6
1977 Female, age 85, both hemispheres 33.0
2702 Female, age 67, right hemisphere 32.4
2729 Female, age 91, right hemisphere 31.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.2
Samples: 197

Max nTPM: 81.3
Min nTPM: 22.3
Std nTPM: 9.0
Median nTPM: 41.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 81.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 74.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 71.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 70.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 70.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 64.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 64.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 62.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 62.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 61.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 59.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.6
FF:10169-103B7 60 years, female 78.4
FF:10153-102I9 76 years, female 72.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 14.9
Sample A Female 24.2
Sample B Female 17.6
Sample C Male 20.8
Sample D Male 14.9
Entorhinal cortex
nTPM: 14.6
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.3
Sample A Female 17.1
Sample B Female 14.4
Sample C Male 13.6
Sample D Male 13.3
Subiculum
nTPM: 15.5
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.0
Sample A Female 17.7
Sample B Female 15.2
Sample C Male 14.0
Sample D Male 14.9
Ventral hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 20.0
Min nTPM: 12.5
Sample A Female 18.5
Sample B Female 12.5
Sample C Male 18.7
Sample D Male 20.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 37.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.6
Samples: 4

Max nTPM: 35.8
Min nTPM: 33.5
Sample A Male 33.5
Sample B Male 35.8
Sample C Female 34.6
Sample D Female 34.3
Hippocampal formation
nTPM: 37.9
Samples: 4

Max nTPM: 40.2
Min nTPM: 36.3
Sample A Male 37.6
Sample B Male 40.2
Sample C Female 36.3
Sample D Female 37.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 29.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 29.9
248542 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 29.9
293469 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 26.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.