We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PAF1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PAF1
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:32.8 nTPM
HPA:32.8 nTPM
GTEx:42.9 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:37.9 nTPM
Allen mouse:29.9 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041875
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.8
Sample id Sample description nTPM
Hippocampus
nTPM: 31.8
2529 Female, age 94, left hemisphere 34.9
2148 Female, age 91, left hemisphere 32.7
2621 Female, age 67, right hemisphere 32.4
1855 Male, age 76, left hemisphere 31.7
1898 Male, age 80, left hemisphere 29.7
1911 Female, age 85, right hemisphere 29.5
Dentate gyrus
nTPM: 30.5
2530 Female, age 94, left hemisphere 33.0
2246 Female, age 85, both hemispheres 32.4
2531 Female, age 67, both hemispheres 32.3
2010 Male, age 76, both hemispheres 30.2
2528 Male, age 74, both hemispheres 28.0
1927 Female, age 91, both hemispheres 26.8
Entorhinal gyrus
nTPM: 30.8
2764 Male, age 80, right hemisphere 32.5
2686 Male, age 75, right hemisphere 32.2
2117 Female, age 91, right hemisphere 31.7
2613 Female, age 94, left hemisphere 29.9
1938 Female, age 85, left hemisphere 29.5
1787 Male, age 76, left hemisphere 29.2
Hippocampus, CA1
nTPM: 30.2
2749 Male, age 80, left hemisphere 30.9
2527 Male, age 74, both hemispheres 30.6
2082 Female, age 91, right hemisphere 30.3
2045 Male, age 76, both hemispheres 29.9
1873 Female, age 85, both hemispheres 29.4
Hippocampus, CA2
nTPM: 29.8
1940 Female, age 85, left hemisphere 31.3
2113 Female, age 91, right hemisphere 30.2
2249 Male, age 74, both hemispheres 30.1
1892 Male, age 76, both hemispheres 30.0
2437 Female, age 94, left hemisphere 29.7
1963 Male, age 80, left hemisphere 27.8
Hippocampus, CA3
nTPM: 30.1
2620 Female, age 94, left hemisphere 33.5
1891 Female, age 85, both hemispheres 30.9
2137 Male, age 80, left hemisphere 29.6
2861 Female, age 67, both hemispheres 29.5
1867 Male, age 76, both hemispheres 28.8
2436 Male, age 74, both hemispheres 28.4
Parahippocampal cortex
nTPM: 30.4
2692 Male, age 74, both hemispheres 33.0
2532 Female, age 72, left hemisphere 32.1
2622 Female, age 67, right hemisphere 31.4
2245 Female, age 91, both hemispheres 31.2
1990 Female, age 91, right hemisphere 30.4
1933 Female, age 85, both hemispheres 29.8
1850 Male, age 80, both hemispheres 29.5
2250 Female, age 67, right hemisphere 29.2
2693 Female, age 94, both hemispheres 29.1
2018 Male, age 76, both hemispheres 28.1
Perirhinal gyrus
nTPM: 29.3
1794 Male, age 80, right hemisphere 30.3
2848 Male, age 76, right hemisphere 29.7
1841 Female, age 85, right hemisphere 29.5
2521 Female, age 94, right hemisphere 29.0
1847 Female, age 91, left hemisphere 28.0
Subiculum
nTPM: 32.8
2438 Female, age 94, left hemisphere 36.1
2042 Male, age 76, both hemispheres 34.3
1901 Male, age 80, both hemispheres 32.7
2619 Male, age 74, both hemispheres 32.1
1977 Female, age 85, both hemispheres 31.6
2729 Female, age 91, right hemisphere 30.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 42.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.9
Samples: 197

Max nTPM: 80.7
Min nTPM: 22.1
Std nTPM: 8.9
Median nTPM: 41.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 80.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 73.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 70.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 70.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 69.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 63.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 63.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 62.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 62.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 60.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 58.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 58.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 57.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 57.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 56.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 56.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 56.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 55.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 55.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 55.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 54.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 54.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 52.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 52.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 52.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 51.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 51.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 51.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 50.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 50.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 50.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 50.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 50.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 49.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 49.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 49.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 49.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 49.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 48.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 48.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 48.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 48.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 48.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 48.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 48.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 47.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 47.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 47.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 47.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 46.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 46.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 46.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 46.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 46.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 46.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 46.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 46.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 45.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 45.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 45.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 45.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 45.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 45.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 44.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 44.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 44.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 44.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 44.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 43.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 43.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 43.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 43.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 43.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 43.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 43.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 43.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 43.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 42.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 42.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 42.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 42.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 42.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 42.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 42.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 42.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 42.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 42.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 42.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 42.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 42.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 41.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 41.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 41.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 41.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 41.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 41.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 41.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 41.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 41.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 41.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 41.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 41.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 41.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 41.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 40.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 40.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 40.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 40.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 40.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 40.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 40.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 40.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 40.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 40.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 40.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 40.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 40.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 39.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 39.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 39.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 39.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 39.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 39.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 39.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 39.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 39.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 39.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 39.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 38.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 38.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 38.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 38.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 38.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 38.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 38.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 38.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 38.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 37.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 37.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 37.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 37.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 37.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 37.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 37.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 37.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 37.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 37.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 37.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 37.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 37.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 37.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 36.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 36.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 36.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 36.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 36.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 36.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 35.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 35.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 35.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 35.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 35.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 35.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 35.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 35.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 35.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 35.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 35.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 34.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 34.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 34.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 34.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 34.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 34.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 34.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 34.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 33.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 32.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 32.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 32.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 32.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 32.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 31.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 31.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 31.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 30.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 30.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 30.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 30.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 29.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 29.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 29.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 28.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 26.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 26.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 22.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.6
FF:10169-103B7 60 years, female 78.4
FF:10153-102I9 76 years, female 72.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 14.9
Sample A Female 24.2
Sample B Female 17.6
Sample C Male 20.8
Sample D Male 14.9
Entorhinal cortex
nTPM: 14.6
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.3
Sample A Female 17.1
Sample B Female 14.4
Sample C Male 13.6
Sample D Male 13.3
Subiculum
nTPM: 15.5
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.0
Sample A Female 17.7
Sample B Female 15.2
Sample C Male 14.0
Sample D Male 14.9
Ventral hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 20.0
Min nTPM: 12.5
Sample A Female 18.5
Sample B Female 12.5
Sample C Male 18.7
Sample D Male 20.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.6
Samples: 4

Max nTPM: 35.8
Min nTPM: 33.5
Sample A Male 33.5
Sample B Male 35.8
Sample C Female 34.6
Sample D Female 34.3
Hippocampal formation
nTPM: 37.9
Samples: 4

Max nTPM: 40.2
Min nTPM: 36.3
Sample A Male 37.6
Sample B Male 40.2
Sample C Female 36.3
Sample D Female 37.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 29.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 29.9
248542 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 29.9
293469 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 26.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.