MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:47.1 nTPM
FANTOM5:80.4 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:36.6 nTPM
Allen mouse:24.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.9
1870 Female, age 42, unknown 35.4
2666 Male, age 74, left hemisphere 34.7
2219 Male, age 76, both hemispheres 33.4
2586 Male, age 75, left hemisphere 33.0
1833 Male, age 53, unknown 32.9
1827 Male, age 72, unknown 32.8
1830 Male, age 51, unknown 32.5
2828 Female, age 72, unknown 32.4
2411 Female, age 72, unknown 31.5
2019 Male, age 18, unknown 30.7
Dorsal raphe nucleus
nTPM: 30.1
2750 Male, age 76, both hemispheres 32.7
1828 Male, age 53, unknown 30.2
2016 Female, age 72, unknown 29.9
2298 Female, age 72, unknown 28.8
2047 Male, age 72, unknown 28.6
Inferior colliculus
nTPM: 30.6
2849 Male, age 72, unknown 34.0
1848 Female, age 42, unknown 30.8
1890 Male, age 53, unknown 29.7
2097 Female, age 72, unknown 27.9
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Pedunculopontine tegmental nucleus
nTPM: 34.2
2338 Male, age 61, both hemispheres 37.5
2334 Male, age 80, both hemispheres 33.8
1921 Female, age 85, both hemispheres 31.1
Periaquaductal grey, anterior
nTPM: 30.7
1947 Male, age 18, unknown 31.6
1795 Male, age 51, unknown 30.8
2502 Female, age 75, unknown 29.7
Periaquaductal grey, dorsal
nTPM: 30.4
2850 Male, age 76, both hemispheres 32.2
2464 Female, age 72, unknown 31.8
1831 Male, age 72, unknown 30.0
1840 Male, age 53, unknown 27.6
Periaquaductal grey, lateral
nTPM: 30.6
2272 Male, age 74, both hemispheres 31.1
2140 Male, age 76, both hemispheres 30.7
2053 Male, age 18, unknown 30.0
Pretectal area
nTPM: 31.7
1815 Male, age 53, unknown 34.4
1817 Female, age 42, unknown 33.7
2407 Male, age 75, both hemispheres 32.4
1816 Male, age 51, unknown 32.2
2007 Male, age 72, unknown 32.1
2825 Male, age 18, unknown 32.0
2667 Female, age 75, unknown 31.3
2273 Male, age 74, both hemispheres 31.2
1944 Female, age 72, unknown 30.8
2316 Male, age 76, right hemisphere 29.6
2224 Female, age 72, unknown 28.9
Red nucleus
nTPM: 34.9
2823 Male, age 76, right hemisphere 37.1
2725 Female, age 75, unknown 36.6
1865 Male, age 51, unknown 36.1
1954 Female, age 42, unknown 35.6
2588 Male, age 74, left hemisphere 35.3
1904 Male, age 53, unknown 35.1
2503 Female, age 72, unknown 35.1
1821 Female, age 72, unknown 34.1
2769 Male, age 72, unknown 34.0
2227 Male, age 72, unknown 33.6
2785 Male, age 18, unknown 33.5
2584 Male, age 75, left hemisphere 33.1
Substantia nigra
nTPM: 30.3
2699 Male, age 18, unknown 33.7
1851 Male, age 51, unknown 31.3
2590 Female, age 75, unknown 31.2
1941 Male, age 53, unknown 30.8
1916 Female, age 42, unknown 30.4
1889 Female, age 72, unknown 30.1
2241 Male, age 72, unknown 29.8
2583 Male, age 75, right hemisphere 29.3
2665 Male, age 74, both hemispheres 29.3
2409 Female, age 72, unknown 27.3
Superior colliculus
nTPM: 31.5
2587 Male, age 74, left hemisphere 34.5
1913 Female, age 42, unknown 34.0
1895 Male, age 76, right hemisphere 32.6
1995 Male, age 72, unknown 31.8
1796 Male, age 53, unknown 31.6
2261 Male, age 18, unknown 30.8
1839 Male, age 51, unknown 30.6
2668 Female, age 75, unknown 30.5
2664 Male, age 75, both hemispheres 29.7
2087 Female, age 72, unknown 29.3
Ventral tegmental area
nTPM: 31.2
2223 Female, age 72, unknown 33.2
2218 Male, age 76, both hemispheres 32.7
2021 Male, age 53, unknown 31.3
1915 Female, age 42, unknown 30.9
1942 Male, age 51, unknown 29.7
2410 Female, age 72, unknown 29.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.1
Samples: 139

Max nTPM: 90.6
Min nTPM: 29.7
Std nTPM: 9.8
Median nTPM: 45.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 90.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 80.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 70.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 66.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 66.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 64.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 64.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 63.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.4
FF:10158-103A5 76 years, female 80.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 31.5
Min nTPM: 18.5
Sample A Female 31.5
Sample B Female 19.8
Sample C Male 19.2
Sample D Male 18.5
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 23.0
Min nTPM: 19.9
Sample B Female 19.9
Sample C Male 23.0
Sample D Male 21.0
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 26.4
Min nTPM: 17.6
Sample A Female 21.4
Sample B Female 17.6
Sample C Male 21.8
Sample D Male 26.4
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 22.9
Min nTPM: 17.4
Sample A Female 21.7
Sample B Female 17.4
Sample C Male 21.4
Sample D Male 22.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 36.1
Sample A Male 37.2
Sample B Male 36.5
Sample C Female 36.1
Sample D Female 36.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.1
248542 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 24.1
293469 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 23.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.