We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PAF1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PAF1
TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:47.1 nTPM
FANTOM5:80.4 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:36.6 nTPM
Allen mouse:24.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.9
1870 Female, age 42, unknown 35.4
2666 Male, age 74, left hemisphere 34.7
2219 Male, age 76, both hemispheres 33.4
2586 Male, age 75, left hemisphere 33.0
1833 Male, age 53, unknown 32.9
1827 Male, age 72, unknown 32.8
1830 Male, age 51, unknown 32.5
2828 Female, age 72, unknown 32.4
2411 Female, age 72, unknown 31.5
2019 Male, age 18, unknown 30.7
Dorsal raphe nucleus
nTPM: 30.1
2750 Male, age 76, both hemispheres 32.7
1828 Male, age 53, unknown 30.2
2016 Female, age 72, unknown 29.9
2298 Female, age 72, unknown 28.8
2047 Male, age 72, unknown 28.6
Inferior colliculus
nTPM: 30.6
2849 Male, age 72, unknown 34.0
1848 Female, age 42, unknown 30.8
1890 Male, age 53, unknown 29.7
2097 Female, age 72, unknown 27.9
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Pedunculopontine tegmental nucleus
nTPM: 34.2
2338 Male, age 61, both hemispheres 37.5
2334 Male, age 80, both hemispheres 33.8
1921 Female, age 85, both hemispheres 31.1
Periaquaductal grey, anterior
nTPM: 30.7
1947 Male, age 18, unknown 31.6
1795 Male, age 51, unknown 30.8
2502 Female, age 75, unknown 29.7
Periaquaductal grey, dorsal
nTPM: 30.4
2850 Male, age 76, both hemispheres 32.2
2464 Female, age 72, unknown 31.8
1831 Male, age 72, unknown 30.0
1840 Male, age 53, unknown 27.6
Periaquaductal grey, lateral
nTPM: 30.6
2272 Male, age 74, both hemispheres 31.1
2140 Male, age 76, both hemispheres 30.7
2053 Male, age 18, unknown 30.0
Pretectal area
nTPM: 31.7
1815 Male, age 53, unknown 34.4
1817 Female, age 42, unknown 33.7
2407 Male, age 75, both hemispheres 32.4
1816 Male, age 51, unknown 32.2
2007 Male, age 72, unknown 32.1
2825 Male, age 18, unknown 32.0
2667 Female, age 75, unknown 31.3
2273 Male, age 74, both hemispheres 31.2
1944 Female, age 72, unknown 30.8
2316 Male, age 76, right hemisphere 29.6
2224 Female, age 72, unknown 28.9
Red nucleus
nTPM: 34.9
2823 Male, age 76, right hemisphere 37.1
2725 Female, age 75, unknown 36.6
1865 Male, age 51, unknown 36.1
1954 Female, age 42, unknown 35.6
2588 Male, age 74, left hemisphere 35.3
1904 Male, age 53, unknown 35.1
2503 Female, age 72, unknown 35.1
1821 Female, age 72, unknown 34.1
2769 Male, age 72, unknown 34.0
2227 Male, age 72, unknown 33.6
2785 Male, age 18, unknown 33.5
2584 Male, age 75, left hemisphere 33.1
Substantia nigra
nTPM: 30.3
2699 Male, age 18, unknown 33.7
1851 Male, age 51, unknown 31.3
2590 Female, age 75, unknown 31.2
1941 Male, age 53, unknown 30.8
1916 Female, age 42, unknown 30.4
1889 Female, age 72, unknown 30.1
2241 Male, age 72, unknown 29.8
2583 Male, age 75, right hemisphere 29.3
2665 Male, age 74, both hemispheres 29.3
2409 Female, age 72, unknown 27.3
Superior colliculus
nTPM: 31.5
2587 Male, age 74, left hemisphere 34.5
1913 Female, age 42, unknown 34.0
1895 Male, age 76, right hemisphere 32.6
1995 Male, age 72, unknown 31.8
1796 Male, age 53, unknown 31.6
2261 Male, age 18, unknown 30.8
1839 Male, age 51, unknown 30.6
2668 Female, age 75, unknown 30.5
2664 Male, age 75, both hemispheres 29.7
2087 Female, age 72, unknown 29.3
Ventral tegmental area
nTPM: 31.2
2223 Female, age 72, unknown 33.2
2218 Male, age 76, both hemispheres 32.7
2021 Male, age 53, unknown 31.3
1915 Female, age 42, unknown 30.9
1942 Male, age 51, unknown 29.7
2410 Female, age 72, unknown 29.5

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.1
Samples: 139

Max nTPM: 90.6
Min nTPM: 29.7
Std nTPM: 9.8
Median nTPM: 45.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 90.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 80.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 70.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 66.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 66.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 64.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 64.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 63.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 60.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 60.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 59.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 58.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 57.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 57.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 57.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 56.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 56.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 56.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 55.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 55.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 53.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 53.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 53.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 53.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 52.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 51.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 51.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 51.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 50.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 50.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 50.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 50.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 50.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 50.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 50.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 50.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 50.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 49.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 49.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 49.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 49.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 49.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 48.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 48.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 48.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 48.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 47.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 47.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 47.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 47.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 46.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 46.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 46.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 46.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 45.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 45.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 45.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 45.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 45.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 44.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 44.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 44.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 44.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 44.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 44.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 44.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 43.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 43.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 43.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 43.7
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 43.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 43.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 43.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 42.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 42.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 42.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 42.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 42.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 42.6
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 42.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 41.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 41.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 41.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.6
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 40.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 40.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 40.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 40.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 40.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 40.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 40.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 40.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 40.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 40.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 40.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 40.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 40.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 40.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 39.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 39.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 39.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 39.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 39.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 39.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 38.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 38.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 38.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 38.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 38.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 38.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 37.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 37.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 37.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 37.4
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 37.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 36.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 36.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 35.3
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 35.0
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 34.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 33.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 32.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 31.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 31.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 29.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 80.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.4
FF:10158-103A5 76 years, female 80.4

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 31.5
Min nTPM: 18.5
Sample A Female 31.5
Sample B Female 19.8
Sample C Male 19.2
Sample D Male 18.5
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 23.0
Min nTPM: 19.9
Sample B Female 19.9
Sample C Male 23.0
Sample D Male 21.0
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 26.4
Min nTPM: 17.6
Sample A Female 21.4
Sample B Female 17.6
Sample C Male 21.8
Sample D Male 26.4
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 22.9
Min nTPM: 17.4
Sample A Female 21.7
Sample B Female 17.4
Sample C Male 21.4
Sample D Male 22.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 36.1
Sample A Male 37.2
Sample B Male 36.5
Sample C Female 36.1
Sample D Female 36.7

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.1
248542 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 24.1
293469 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 23.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.