ABOUTMENU
HELP
NEWS
VPS41
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:31.2 nTPM
HPA:31.2 nTPM
GTEx:19.9 nTPM
FANTOM5:87.2 Scaled Tags Per Million
Pig:41.3 nTPM
Mouse:117.9 nTPM
Allen mouse:8.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020080Antibody HPA020299
Glial cells Not detectedLow
Neuronal cells LowHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Hippocampus
nTPM: 18.0
1898 Male, age 80, left hemisphere 22.1
2529 Female, age 94, left hemisphere 21.3
1855 Male, age 76, left hemisphere 16.7
2621 Female, age 67, right hemisphere 16.5
1911 Female, age 85, right hemisphere 16.1
2148 Female, age 91, left hemisphere 15.6
Dentate gyrus
nTPM: 17.6
2010 Male, age 76, both hemispheres 21.4
1927 Female, age 91, both hemispheres 20.6
2246 Female, age 85, both hemispheres 17.9
2528 Male, age 74, both hemispheres 17.2
2530 Female, age 94, left hemisphere 15.2
2531 Female, age 67, both hemispheres 13.5
Entorhinal gyrus
nTPM: 25.0
1938 Female, age 85, left hemisphere 36.9
1787 Male, age 76, left hemisphere 29.8
2764 Male, age 80, right hemisphere 27.6
2686 Male, age 75, right hemisphere 19.7
2613 Female, age 94, left hemisphere 18.5
2117 Female, age 91, right hemisphere 17.8
Hippocampus, CA1
nTPM: 21.5
2749 Male, age 80, left hemisphere 36.9
2527 Male, age 74, both hemispheres 20.3
1873 Female, age 85, both hemispheres 20.0
2045 Male, age 76, both hemispheres 15.4
2082 Female, age 91, right hemisphere 14.9
Hippocampus, CA2
nTPM: 20.3
1892 Male, age 76, both hemispheres 28.3
1963 Male, age 80, left hemisphere 24.1
1940 Female, age 85, left hemisphere 21.2
2249 Male, age 74, both hemispheres 17.0
2113 Female, age 91, right hemisphere 16.2
2437 Female, age 94, left hemisphere 15.3
Hippocampus, CA3
nTPM: 17.7
2137 Male, age 80, left hemisphere 26.3
2436 Male, age 74, both hemispheres 21.4
1867 Male, age 76, both hemispheres 20.1
1891 Female, age 85, both hemispheres 17.0
2861 Female, age 67, both hemispheres 11.6
2620 Female, age 94, left hemisphere 10.1
Parahippocampal cortex
nTPM: 23.2
1850 Male, age 80, both hemispheres 40.3
1990 Female, age 91, right hemisphere 26.7
1933 Female, age 85, both hemispheres 25.9
2532 Female, age 72, left hemisphere 24.6
2018 Male, age 76, both hemispheres 22.3
2692 Male, age 74, both hemispheres 20.2
2245 Female, age 91, both hemispheres 20.1
2693 Female, age 94, both hemispheres 19.5
2250 Female, age 67, right hemisphere 18.4
2622 Female, age 67, right hemisphere 14.1
Perirhinal gyrus
nTPM: 31.2
1794 Male, age 80, right hemisphere 34.5
1847 Female, age 91, left hemisphere 33.3
1841 Female, age 85, right hemisphere 32.9
2848 Male, age 76, right hemisphere 31.4
2521 Female, age 94, right hemisphere 24.2
Subiculum
nTPM: 18.7
1977 Female, age 85, both hemispheres 22.0
1901 Male, age 80, both hemispheres 21.4
2438 Female, age 94, left hemisphere 18.6
2042 Male, age 76, both hemispheres 17.0
2619 Male, age 74, both hemispheres 16.9
2729 Female, age 91, right hemisphere 16.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.9
Samples: 197

Max nTPM: 36.7
Min nTPM: 9.7
Std nTPM: 4.5
Median nTPM: 19.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 36.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 34.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 33.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 33.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 32.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 32.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 32.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 30.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 29.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 28.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 27.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 87.2
FF:10169-103B7 60 years, female 96.2
FF:10153-102I9 76 years, female 78.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 41.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 41.3
Samples: 4

Max nTPM: 47.6
Min nTPM: 32.2
Sample A Female 47.6
Sample B Female 46.9
Sample C Male 38.6
Sample D Male 32.2
Entorhinal cortex
nTPM: 36.3
Samples: 4

Max nTPM: 43.5
Min nTPM: 31.0
Sample A Female 33.1
Sample B Female 43.5
Sample C Male 37.4
Sample D Male 31.0
Subiculum
nTPM: 36.4
Samples: 4

Max nTPM: 40.3
Min nTPM: 33.4
Sample A Female 40.3
Sample B Female 36.1
Sample C Male 35.9
Sample D Male 33.4
Ventral hippocampus
nTPM: 38.8
Samples: 4

Max nTPM: 45.9
Min nTPM: 30.9
Sample A Female 36.7
Sample B Female 30.9
Sample C Male 45.9
Sample D Male 41.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 117.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 118.0
Samples: 4

Max nTPM: 132.1
Min nTPM: 110.5
Sample A Male 110.5
Sample B Male 116.5
Sample C Female 112.7
Sample D Female 132.1
Hippocampal formation
nTPM: 116.5
Samples: 4

Max nTPM: 125.9
Min nTPM: 106.1
Sample A Male 113.8
Sample B Male 120.3
Sample C Female 125.9
Sample D Female 106.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
70194946 Antisense, RP_050517_02_A11, Mouse strain C57BL/6J (56 days, male) 8.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.