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VPS41
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  • VPS41
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:19.3 nTPM
HPA Brain:74.8 nTPM
GTEx:19.3 nTPM
FANTOM5:86.6 Scaled Tags Per Million
Pig:58.2 nTPM
Mouse:118.0 nTPM
Allen mouse:8.7 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA020080Antibody HPA020299
Glial cells Not detectedLow
Neuronal cells LowHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 74.8
Sample id Sample description nTPM
Hippocampus
nTPM: 48.2
1898 Male, age 80, left hemisphere 57.2
2529 Female, age 94, left hemisphere 54.8
1855 Male, age 76, left hemisphere 45.3
2621 Female, age 67, right hemisphere 44.8
1911 Female, age 85, right hemisphere 44.2
2148 Female, age 91, left hemisphere 42.7
Dentate gyrus
nTPM: 46.9
2010 Male, age 76, both hemispheres 55.6
1927 Female, age 91, both hemispheres 53.2
2246 Female, age 85, both hemispheres 47.4
2528 Male, age 74, both hemispheres 45.5
2530 Female, age 94, left hemisphere 42.1
2531 Female, age 67, both hemispheres 37.8
Entorhinal gyrus
nTPM: 62.0
1938 Female, age 85, left hemisphere 87.1
1787 Male, age 76, left hemisphere 71.6
2764 Male, age 80, right hemisphere 67.3
2686 Male, age 75, right hemisphere 50.6
2117 Female, age 91, right hemisphere 47.6
2613 Female, age 94, left hemisphere 47.5
Hippocampus, CA1
nTPM: 55.3
2749 Male, age 80, left hemisphere 89.0
1873 Female, age 85, both hemispheres 52.2
2527 Male, age 74, both hemispheres 51.9
2045 Male, age 76, both hemispheres 42.0
2082 Female, age 91, right hemisphere 41.5
Hippocampus, CA2
nTPM: 52.9
1892 Male, age 76, both hemispheres 69.3
1963 Male, age 80, left hemisphere 61.6
1940 Female, age 85, left hemisphere 55.5
2249 Male, age 74, both hemispheres 45.6
2113 Female, age 91, right hemisphere 44.0
2437 Female, age 94, left hemisphere 41.7
Hippocampus, CA3
nTPM: 47.3
2137 Male, age 80, left hemisphere 64.9
2436 Male, age 74, both hemispheres 56.1
1867 Male, age 76, both hemispheres 52.7
1891 Female, age 85, both hemispheres 45.4
2861 Female, age 67, both hemispheres 34.1
2620 Female, age 94, left hemisphere 30.7
Parahippocampal cortex
nTPM: 58.3
1850 Male, age 80, both hemispheres 94.5
1990 Female, age 91, right hemisphere 65.9
1933 Female, age 85, both hemispheres 64.1
2532 Female, age 72, left hemisphere 61.4
2018 Male, age 76, both hemispheres 56.9
2245 Female, age 91, both hemispheres 52.8
2692 Male, age 74, both hemispheres 50.9
2693 Female, age 94, both hemispheres 49.9
2250 Female, age 67, right hemisphere 48.3
2622 Female, age 67, right hemisphere 38.6
Perirhinal gyrus
nTPM: 74.8
1794 Male, age 80, right hemisphere 81.8
1847 Female, age 91, left hemisphere 80.4
1841 Female, age 85, right hemisphere 78.1
2848 Male, age 76, right hemisphere 73.9
2521 Female, age 94, right hemisphere 59.8
Subiculum
nTPM: 49.6
1977 Female, age 85, both hemispheres 56.3
1901 Male, age 80, both hemispheres 55.2
2438 Female, age 94, left hemisphere 50.0
2042 Male, age 76, both hemispheres 47.1
2619 Male, age 74, both hemispheres 44.9
2729 Female, age 91, right hemisphere 44.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 19.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.3
Samples: 197

Max nTPM: 35.5
Min nTPM: 9.5
Std nTPM: 4.3
Median nTPM: 18.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 35.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 33.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 32.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 32.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 31.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 31.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 30.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 29.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 28.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 27.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 26.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 26.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 26.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 25.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 25.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 25.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 25.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 25.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 25.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 25.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 25.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 25.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 25.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 24.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 24.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 24.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 23.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 23.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 23.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 23.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 23.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 23.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 23.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 22.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 22.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 22.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 22.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 22.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 22.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 22.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 22.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 22.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 22.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 22.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 21.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 21.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 21.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 21.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 21.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 21.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 21.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 21.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 21.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 21.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 21.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 21.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 20.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 20.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 20.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 20.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 20.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 20.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 20.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 20.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 20.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 20.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 20.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 20.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 19.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 19.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 19.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 19.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 19.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 19.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 19.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 19.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 19.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 19.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 19.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 19.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 19.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 19.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 19.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 19.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 19.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 19.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 19.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 19.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 19.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 19.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 19.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 18.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 18.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 18.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 18.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 18.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 18.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 18.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 18.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 18.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 18.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 18.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 18.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 18.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 18.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 18.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 18.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 18.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 18.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 18.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 18.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 18.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 18.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 18.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 18.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 18.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 18.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 18.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 18.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 18.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 18.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 17.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 17.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 17.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 17.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 17.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 17.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 17.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 17.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 17.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 17.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 17.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 17.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 17.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 17.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 17.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 17.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 17.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 17.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 16.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 16.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 16.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 16.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 16.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 16.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 16.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 16.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 16.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 16.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 16.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 16.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 16.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 16.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 16.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 15.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 15.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 15.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 15.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 15.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 15.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 15.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 15.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 15.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 15.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 15.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 15.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 15.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 15.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 15.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 15.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 15.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 14.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 14.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 14.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 14.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 14.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 14.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 14.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 14.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 14.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 14.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 14.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 14.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 14.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 13.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 13.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 13.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 13.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 13.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 12.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 12.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 12.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 11.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 11.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 11.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 11.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 9.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 86.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 86.6
FF:10169-103B7 60 years, female 95.5
FF:10153-102I9 76 years, female 77.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 58.2
Pig sample Sample description nTPM
Subiculum
nTPM: 51.5
Samples: 4

Max nTPM: 56.1
Min nTPM: 47.9
Sample A Female 56.1
Sample B Female 51.4
Sample C Male 50.5
Sample D Male 47.9
Dorsal hippocampus
nTPM: 58.3
Samples: 4

Max nTPM: 66.3
Min nTPM: 46.0
Sample A Female 65.7
Sample B Female 66.3
Sample C Male 55.1
Sample D Male 46.0
Entorhinal cortex
nTPM: 51.7
Samples: 4

Max nTPM: 61.8
Min nTPM: 44.1
Sample A Female 47.3
Sample B Female 61.8
Sample C Male 53.5
Sample D Male 44.1
Ventral hippocampus
nTPM: 54.6
Samples: 4

Max nTPM: 63.6
Min nTPM: 44.5
Sample A Female 51.5
Sample B Female 44.5
Sample C Male 63.6
Sample D Male 58.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 118.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 118.0
Samples: 4

Max nTPM: 132.3
Min nTPM: 110.5
Sample A Male 110.5
Sample B Male 116.5
Sample C Female 112.7
Sample D Female 132.3
Hippocampal formation
nTPM: 116.6
Samples: 4

Max nTPM: 126.0
Min nTPM: 106.1
Sample A Male 113.9
Sample B Male 120.4
Sample C Female 126.0
Sample D Female 106.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
70194946 Antisense, RP_050517_02_A11, Mouse strain C57BL/6J (56 days, male) 8.7

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