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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:41.6 nTPM
HPA:41.6 nTPM
GTEx:124.9 nTPM
FANTOM5:154.9 Scaled Tags Per Million
Pig:57.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 41.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 37.8
1981 Female, age 72, midline 40.1
2048 Male, age 55, midline 39.3
2816 Male, age 47, midline 37.6
2194 Female, age 79, both hemispheres 37.0
2565 Male, age 75, midline 35.2
Cervical spinal cord, dorsal horn
nTPM: 41.4
2296 Male, age 66, both hemispheres 57.4
2173 Female, age 72, unknown 47.6
2069 Male, age 47, both hemispheres 40.4
1877 Male, age 55, unknown 38.4
2297 Male, age 75, both hemispheres 33.7
2721 Male, age 90, both hemispheres 31.0
Cervical spinal cord, ventral horn
nTPM: 41.6
2480 Male, age 75, both hemispheres 44.0
2809 Male, age 90, both hemispheres 42.7
2068 Male, age 55, unknown 42.5
2098 Female, age 72, unknown 42.3
2820 Female, age 79, both hemispheres 40.5
2295 Male, age 66, both hemispheres 37.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 124.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 124.9
Samples: 159

Max nTPM: 288.8
Min nTPM: 40.2
Std nTPM: 45.8
Median nTPM: 116.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 288.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 255.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 253.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 251.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 248.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 239.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 219.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 218.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 216.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 210.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 205.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 199.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 197.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 196.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 190.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 190.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 189.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 186.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 185.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 179.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 172.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 170.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 167.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 167.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 166.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 166.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 164.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 164.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 164.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 164.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 162.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 161.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 161.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 159.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 157.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 155.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 150.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 144.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 143.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 143.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 142.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 141.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 139.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 139.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 137.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 137.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 137.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 136.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 136.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 136.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 136.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 135.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 134.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 134.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 133.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 132.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 131.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 130.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 129.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 129.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 127.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 127.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 126.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 124.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 124.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 123.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 122.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 121.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 121.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 121.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 120.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 120.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 118.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 117.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 117.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 116.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 116.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 116.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 116.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 116.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 114.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 114.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 113.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 113.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 112.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 112.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 111.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 111.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 110.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 110.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 109.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 108.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 107.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 106.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 106.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 106.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 105.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 105.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 105.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 104.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 104.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 104.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 103.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 102.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 102.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 101.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 101.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 100.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 100.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 98.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 98.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 97.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 97.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 96.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 96.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 95.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 93.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 92.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 92.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 91.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 90.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 89.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 89.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 88.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 88.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 88.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 87.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 86.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 84.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 82.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 80.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 80.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 80.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 79.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 78.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 75.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 75.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 74.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 74.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 72.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 70.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 70.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 70.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 66.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 65.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 64.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 63.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 61.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 61.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 56.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 56.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 40.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 154.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 154.9
FF:10159-103A6 76 years, female 172.5
FF:10181-103D1 60 years, female 137.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 47.5
Samples: 4

Max nTPM: 52.2
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 49.5
Sample C Male 52.2
Sample D Male 51.7
Ventral spinal cord
nTPM: 57.4
Samples: 4

Max nTPM: 73.4
Min nTPM: 49.6
Sample A Female 51.3
Sample B Female 55.2
Sample C Male 49.6
Sample D Male 73.4

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