We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PAX6
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PAX6
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:21.4 nTPM
HPA:21.4 nTPM
GTEx:7.2 nTPM
FANTOM5:115.7 Scaled Tags Per Million
Pig:15.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 21.4
2048 Male, age 55, midline 24.8
2816 Male, age 47, midline 21.8
1981 Female, age 72, midline 21.7
2565 Male, age 75, midline 21.0
2194 Female, age 79, both hemispheres 17.8
Cervical spinal cord, dorsal horn
nTPM: 19.4
2721 Male, age 90, both hemispheres 21.7
2296 Male, age 66, both hemispheres 21.2
2173 Female, age 72, unknown 19.5
1877 Male, age 55, unknown 18.5
2069 Male, age 47, both hemispheres 18.4
2297 Male, age 75, both hemispheres 17.1
Cervical spinal cord, ventral horn
nTPM: 18.6
2098 Female, age 72, unknown 25.8
2295 Male, age 66, both hemispheres 18.9
2809 Male, age 90, both hemispheres 18.4
2068 Male, age 55, unknown 17.9
2820 Female, age 79, both hemispheres 15.7
2480 Male, age 75, both hemispheres 15.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 7.2
Samples: 159

Max nTPM: 64.5
Min nTPM: 0.6
Std nTPM: 6.3
Median nTPM: 6.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 64.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 29.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 23.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 19.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 18.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 17.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 16.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 15.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 14.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 14.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 13.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 13.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 13.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 12.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 12.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 12.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 12.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 12.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 11.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 11.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 11.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 11.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 11.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 10.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 10.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 10.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 10.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 10.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 10.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 10.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 10.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 10.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 9.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 9.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 9.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 9.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 9.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 9.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 8.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 8.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 8.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 8.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 8.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 8.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 8.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 8.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 8.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 7.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 7.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 7.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 7.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 7.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 7.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 7.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 7.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 7.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 7.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 7.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 7.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 7.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 7.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 7.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 7.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 7.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 7.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 7.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 6.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 6.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 6.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 6.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 6.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 6.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 6.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 6.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 6.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 6.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 6.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 6.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 6.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 6.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 6.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 6.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 5.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 5.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 5.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 5.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 5.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 5.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 5.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 5.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 5.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 5.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 5.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 4.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 4.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 4.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 4.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 4.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 4.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 4.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 4.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 4.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 4.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 4.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 4.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 4.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 4.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 4.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 4.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 4.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 3.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 3.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 3.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 3.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 3.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 3.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 3.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 3.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 3.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 2.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 0.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 0.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 0.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 115.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 115.7
FF:10181-103D1 60 years, female 137.2
FF:10159-103A6 76 years, female 94.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 12.4
Samples: 4

Max nTPM: 15.9
Min nTPM: 9.2
Sample A Female 11.8
Sample B Female 15.9
Sample C Male 9.2
Sample D Male 12.7
Ventral spinal cord
nTPM: 15.5
Samples: 4

Max nTPM: 17.0
Min nTPM: 12.6
Sample A Female 17.0
Sample B Female 15.9
Sample C Male 12.6
Sample D Male 16.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.