We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TSR3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • TSR3
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:47.7 nTPM
HPA:47.7 nTPM
GTEx:65.8 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:24.7 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 47.7
Sample id Sample description nTPM
Amygdala
nTPM: 46.0
2517 Female, age 94, left hemisphere 48.1
2695 Female, age 67, right hemisphere 47.5
2514 Male, age 75, right hemisphere 45.4
2814 Male, age 76, right hemisphere 44.8
1987 Female, age 91, left hemisphere 44.0
Basal amygdala
nTPM: 45.1
2609 Male, age 75, right hemisphere 52.1
2110 Male, age 80, left hemisphere 44.6
1955 Male, age 76, both hemispheres 43.9
2685 Female, age 94, left hemisphere 43.9
2243 Female, age 91, right hemisphere 43.2
2827 Female, age 67, right hemisphere 43.2
Central amygdala
nTPM: 47.7
2826 Female, age 94, left hemisphere 56.6
2515 Male, age 75, right hemisphere 49.8
1905 Male, age 76, both hemispheres 46.3
2239 Male, age 80, left hemisphere 46.0
2701 Female, age 91, right hemisphere 40.0
Corticomedial amygdala
nTPM: 43.3
2428 Male, age 75, right hemisphere 48.1
2535 Female, age 67, right hemisphere 45.2
2829 Male, age 80, left hemisphere 43.2
2429 Female, age 94, left hemisphere 42.6
2242 Female, age 91, right hemisphere 40.9
2240 Male, age 76, both hemispheres 39.8
Lateral amygdala
nTPM: 47.4
2534 Female, age 94, left hemisphere 54.6
2516 Male, age 75, right hemisphere 50.9
2256 Male, age 80, left hemisphere 46.3
2830 Female, age 67, right hemisphere 44.9
1883 Male, age 76, both hemispheres 44.8
2255 Female, age 91, right hemisphere 42.8
Stria terminalis, bed nucleus
nTPM: 40.6
1974 Female, age 91, both hemispheres 43.6
2486 Female, age 94, both hemispheres 40.1
2201 Male, age 74, unknown 38.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 65.8
Samples: 152

Max nTPM: 158.8
Min nTPM: 28.5
Std nTPM: 18.8
Median nTPM: 62.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 158.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 157.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 119.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 112.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 103.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 98.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 97.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 96.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 96.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 94.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 93.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 91.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 90.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 90.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 90.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 89.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 89.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 86.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 85.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 84.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 83.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 83.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 80.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 79.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 78.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 77.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 76.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 76.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 75.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 74.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 74.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 73.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 72.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 72.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 72.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 72.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 71.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 70.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 70.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 70.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 70.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 70.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 69.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 69.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 69.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 69.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 69.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 68.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 68.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 68.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 68.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 68.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 68.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 67.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 67.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 67.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 67.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 66.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 66.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 66.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 66.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 66.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 65.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 65.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 65.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 65.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 64.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 63.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 63.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 62.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 62.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 62.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 62.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 62.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 61.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 61.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 61.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 61.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 60.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 60.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 60.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 60.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 60.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 60.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 59.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 59.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 59.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 59.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 59.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 58.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 58.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 58.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 58.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 57.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 57.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 56.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 56.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 56.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 56.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 56.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 55.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 55.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 54.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 54.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 53.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 53.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 53.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 53.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 53.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 51.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 51.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 51.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 50.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 50.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 50.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 49.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 48.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 48.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 46.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 46.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 46.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 46.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 45.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 45.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 44.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 44.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 44.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 43.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 43.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 41.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 38.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 33.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 30.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 29.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 14.9
FF:10151-102I7 76 years, female 14.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.8
Pig sample Sample description nTPM
Amygdala
nTPM: 9.8
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.0
Sample A Female 13.2
Sample B Female 8.0
Sample C Male 9.4
Sample D Male 8.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 24.8
Samples: 4

Max nTPM: 26.9
Min nTPM: 23.0
Sample A Male 23.0
Sample B Male 26.9
Sample C Female 24.3
Sample D Female 24.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
68546094 Antisense, RP_050120_02_A01, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.