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PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.1 nTPM
HPA:33.1 nTPM
FANTOM5:97.0 Scaled Tags Per Million
Pig:26.4 nTPM
Mouse:57.1 nTPM
Allen mouse:12.6 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 33.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 21.8
1984 Male, age 76, both hemispheres 24.8
2188 Female, age 91, both hemispheres 23.9
2090 Male, age 80, both hemispheres 22.8
2290 Female, age 85, both hemispheres 18.7
2276 Male, age 61, both hemispheres 18.6
Area postrema
nTPM: 22.1
2054 Male, age 76, both hemispheres 23.9
2712 Male, age 80, both hemispheres 21.8
2799 Male, age 61, both hemispheres 20.5
Cuneate nuclei
nTPM: 24.6
2131 Male, age 76, both hemispheres 26.0
2376 Male, age 61, both hemispheres 25.5
2381 Male, age 80, both hemispheres 22.4
Dorsal cochlear nucleus
nTPM: 24.6
2370 Male, age 61, both hemispheres 29.6
2058 Male, age 76, both hemispheres 26.4
2187 Female, age 91, both hemispheres 24.1
2802 Male, age 74, right hemisphere 23.4
2378 Male, age 80, both hemispheres 22.3
2738 Female, age 85, both hemispheres 21.5
Dorsal medullary reticular nucleus
nTPM: 25.0
2088 Male, age 76, both hemispheres 25.8
2040 Female, age 85, both hemispheres 25.2
2373 Male, age 61, both hemispheres 24.2
Dorsal motor vagal complex
nTPM: 21.8
2133 Female, age 91, both hemispheres 23.6
2185 Male, age 76, both hemispheres 23.5
2000 Male, age 74, unknown 23.3
2844 Male, age 55, unknown 22.6
2813 Female, age 72, unknown 21.8
2807 Female, age 85, both hemispheres 20.3
2643 Male, age 74, both hemispheres 20.2
2797 Male, age 61, both hemispheres 19.2
Dorsal tegmental nucleus
nTPM: 29.3
2358 Male, age 61, both hemispheres 41.5
2789 Female, age 85, left hemisphere 30.4
2247 Female, age 85, left hemisphere 30.2
2265 Male, age 74, both hemispheres 27.6
2083 Male, age 80, both hemispheres 24.0
1936 Male, age 76, left hemisphere 22.0
Dorsolateral tegmental area
nTPM: 22.8
2751 Female, age 85, both hemispheres 24.7
2654 Male, age 80, both hemispheres 24.0
2141 Male, age 76, both hemispheres 22.9
2254 Male, age 61, both hemispheres 21.2
2360 Male, age 74, both hemispheres 21.0
Gigantocellular reticular nuclei, medullary
nTPM: 23.2
2022 Male, age 76, right hemisphere 30.5
1876 Female, age 85, both hemispheres 24.7
2462 Male, age 74, both hemispheres 24.4
2387 Female, age 91, both hemispheres 23.0
2579 Female, age 91, both hemispheres 22.5
2281 Male, age 80, both hemispheres 18.7
2709 Male, age 61, both hemispheres 18.7
Gigantocellular reticular nuclei, pars
nTPM: 22.6
2065 Male, age 74, right hemisphere 24.3
2084 Female, age 85, both hemispheres 24.3
2168 Male, age 76, both hemispheres 23.2
2706 Male, age 80, both hemispheres 23.0
2255 Male, age 61, both hemispheres 18.3
Inferior olive
nTPM: 20.9
2563 Male, age 74, both hemispheres 23.6
2178 Male, age 61, both hemispheres 22.0
2379 Male, age 80, both hemispheres 22.0
2628 Female, age 91, both hemispheres 21.8
2085 Female, age 85, both hemispheres 21.5
2288 Male, age 76, both hemispheres 14.5
Kolliker-Fuse nucleus
nTPM: 22.9
2163 Male, age 80, both hemispheres 26.3
2793 Female, age 91, left hemisphere 25.4
2753 Male, age 76, right hemisphere 20.2
2315 Male, age 76, right hemisphere 19.6
Lateral lemniscal nuclei
nTPM: 25.3
2036 Male, age 80, both hemispheres 28.2
2746 Female, age 85, left hemisphere 27.0
2169 Male, age 76, both hemispheres 25.1
2453 Male, age 74, right hemisphere 24.7
2271 Female, age 91, left hemisphere 21.3
Lateral medullary reticular nucleus
nTPM: 23.6
2044 Male, age 76, both hemispheres 28.0
2374 Male, age 61, both hemispheres 24.0
2286 Male, age 74, both hemispheres 23.4
2852 Male, age 80, both hemispheres 22.5
2190 Female, age 85, both hemispheres 22.0
2804 Female, age 91, both hemispheres 21.7
Lateral parabrachial nucleus
nTPM: 25.0
2139 Female, age 85, right hemisphere 26.5
2790 Male, age 61, both hemispheres 26.1
2013 Male, age 80, both hemispheres 24.3
2792 Male, age 76, both hemispheres 23.1
Lateral vestibular nucleus
nTPM: 28.3
2280 Male, age 80, both hemispheres 28.5
2184 Male, age 76, both hemispheres 28.0
Locus coeruleus
nTPM: 24.9
2123 Female, age 91, both hemispheres 28.0
2155 Male, age 61, both hemispheres 26.4
2720 Male, age 74, both hemispheres 25.6
2363 Female, age 85, both hemispheres 25.1
2014 Male, age 55, unknown 24.9
2274 Female, age 72, unknown 24.6
2745 Female, age 85, both hemispheres 24.6
1980 Male, age 76, both hemispheres 23.1
2162 Male, age 80, both hemispheres 23.1
2788 Male, age 74, unknown 23.1
Medial olivary nucleus
nTPM: 23.9
1943 Male, age 61, both hemispheres 28.4
2851 Male, age 80, both hemispheres 23.1
2843 Female, age 85, both hemispheres 22.8
1962 Male, age 76, both hemispheres 22.6
2138 Female, age 91, both hemispheres 22.5
Medial parabrachial nucleus
nTPM: 27.0
2375 Female, age 85, right hemisphere 31.1
2156 Male, age 61, both hemispheres 29.5
2786 Male, age 76, both hemispheres 25.6
2463 Female, age 85, right hemisphere 25.3
2854 Male, age 80, both hemispheres 25.3
2170 Female, age 91, both hemispheres 25.2
Medial periolivary nuclei
nTPM: 24.5
2171 Female, age 85, both hemispheres 27.4
2081 Male, age 80, both hemispheres 24.8
2791 Male, age 74, right hemisphere 24.1
2063 Male, age 76, both hemispheres 23.9
2458 Female, age 91, both hemispheres 22.5
Medial vestibular nucleus
nTPM: 25.9
2624 Male, age 61, both hemispheres 31.7
2093 Male, age 80, both hemispheres 26.2
2134 Male, age 76, both hemispheres 24.6
2801 Male, age 74, both hemispheres 24.6
2803 Female, age 91, both hemispheres 24.5
2743 Female, age 85, both hemispheres 23.7
Motor facial nucleus
nTPM: 24.1
2365 Male, age 74, right hemisphere 26.7
2697 Female, age 85, both hemispheres 25.8
2062 Male, age 76, both hemispheres 24.9
2126 Male, age 61, both hemispheres 23.5
2264 Male, age 80, both hemispheres 22.0
2795 Female, age 91, both hemispheres 21.8
Motor hypoglossal nucleus
nTPM: 23.7
2461 Male, age 61, both hemispheres 28.1
2125 Female, age 91, both hemispheres 24.7
2132 Female, age 85, both hemispheres 22.6
2182 Male, age 80, both hemispheres 22.3
2277 Male, age 76, both hemispheres 20.8
Motor trigeminal nucleus
nTPM: 24.0
2079 Male, age 80, both hemispheres 26.5
2270 Female, age 91, both hemispheres 26.0
2309 Male, age 76, both hemispheres 24.8
2560 Male, age 74, both hemispheres 23.9
2256 Male, age 61, both hemispheres 19.1
Nuclei of the trapezoid body
nTPM: 23.8
2735 Female, age 85, both hemispheres 26.5
1983 Male, age 76, both hemispheres 24.7
2159 Male, age 61, both hemispheres 23.2
2166 Male, age 80, both hemispheres 23.1
2368 Female, age 91, both hemispheres 21.3
Nucleus ambiguus
nTPM: 22.2
2096 Female, age 85, both hemispheres 23.8
2071 Male, age 76, both hemispheres 20.5
Nucleus cuneatus
nTPM: 23.3
2100 Male, age 76, both hemispheres 27.2
2564 Male, age 74, both hemispheres 24.1
2562 Male, age 61, both hemispheres 23.8
2805 Female, age 91, both hemispheres 22.3
2808 Female, age 85, both hemispheres 21.2
2380 Male, age 80, both hemispheres 21.0
Nucleus gracilis
nTPM: 22.8
2292 Female, age 85, both hemispheres 24.5
2627 Male, age 74, both hemispheres 24.4
2626 Male, age 61, both hemispheres 21.5
2382 Male, age 80, both hemispheres 20.9
Nucleus raphe magnus
nTPM: 24.6
2172 Female, age 85, both hemispheres 28.1
2160 Male, age 61, both hemispheres 26.7
2051 Male, age 76, both hemispheres 24.6
2455 Male, age 74, both hemispheres 24.1
2459 Female, age 91, both hemispheres 22.7
2263 Male, age 80, both hemispheres 21.1
Nucleus raphe obscurus
nTPM: 22.1
2046 Male, age 80, midline 23.3
2845 Female, age 85, midline 22.4
2800 Male, age 61, midline 21.8
2142 Male, age 76, midline 20.8
Nucleus raphe pallidus
nTPM: 24.4
1924 Male, age 61, midline 25.6
2183 Male, age 80, midline 25.6
2145 Male, age 76, midline 22.1
Nucleus tractus solitarii
nTPM: 21.3
2284 Male, age 80, both hemispheres 23.5
2656 Male, age 76, both hemispheres 22.7
2144 Female, age 91, right hemisphere 20.0
2191 Female, age 85, both hemispheres 19.0
Paramedian reticular nucleus
nTPM: 26.3
2710 Male, age 61, both hemispheres 29.6
2052 Male, age 76, both hemispheres 26.6
2050 Female, age 85, both hemispheres 25.6
2057 Male, age 80, both hemispheres 23.3
Parvicellular reticular nuclei
nTPM: 24.8
2558 Male, age 74, both hemispheres 25.4
2119 Male, age 80, both hemispheres 24.9
2095 Male, age 76, both hemispheres 23.9
Parvicellular reticular nuclei, medullary
nTPM: 23.9
2189 Female, age 91, both hemispheres 25.4
2091 Female, age 85, both hemispheres 23.4
2181 Male, age 80, left hemisphere 22.9
Peritrigeminal nucleus
nTPM: 24.8
2136 Male, age 76, both hemispheres 27.1
2179 Male, age 61, both hemispheres 26.1
2067 Female, age 85, both hemispheres 25.5
2143 Female, age 91, both hemispheres 22.8
2282 Male, age 80, both hemispheres 22.7
Pontine nuclei
nTPM: 25.7
2787 Female, age 85, both hemispheres 29.3
2782 Male, age 55, unknown 28.2
1863 Male, age 55, unknown 27.5
2727 Male, age 61, right hemisphere 27.1
2115 Male, age 80, left hemisphere 26.3
2109 Female, age 72, unknown 25.2
2454 Male, age 74, left hemisphere 24.7
1968 Male, age 76, left hemisphere 24.4
2272 Female, age 91, both hemispheres 18.2
Pontine raphe nucleus
nTPM: 24.4
2696 Male, age 61, midline 26.5
2122 Female, age 85, midline 25.2
2260 Male, age 80, midline 24.6
2362 Male, age 74, midline 23.4
2853 Male, age 76, midline 22.2
Posteroventral cochlear nucleus
nTPM: 25.9
2371 Male, age 61, both hemispheres 28.5
2135 Female, age 91, both hemispheres 26.8
2070 Male, age 76, both hemispheres 25.2
2341 Male, age 80, both hemispheres 25.0
2752 Female, age 85, both hemispheres 23.8
Prepositus hypoglossal nucleus
nTPM: 21.6
2855 Female, age 85, right hemisphere 24.3
2086 Male, age 80, both hemispheres 23.8
2275 Male, age 61, both hemispheres 16.6
Principal sensory trigeminal nucleus
nTPM: 23.6
2008 Male, age 80, left hemisphere 26.3
2158 Male, age 61, both hemispheres 25.6
2367 Female, age 91, left hemisphere 23.3
2267 Male, age 76, both hemispheres 19.0
Reticular pontine nucleus, caudal
nTPM: 23.1
2259 Male, age 80, right hemisphere 24.2
2092 Male, age 76, both hemispheres 23.4
2559 Male, age 74, both hemispheres 23.4
2457 Female, age 91, both hemispheres 21.2
Reticular pontine nucleus, oral
nTPM: 25.1
1939 Male, age 80, both hemispheres 26.2
2361 Male, age 74, both hemispheres 25.5
2167 Male, age 76, both hemispheres 25.4
2012 Female, age 85, both hemispheres 24.8
2366 Female, age 91, both hemispheres 23.3
Reticulotegmental nucleus
nTPM: 24.2
2707 Male, age 76, both hemispheres 26.5
2269 Female, age 91, both hemispheres 25.0
2452 Male, age 74, both hemispheres 24.1
2258 Male, age 80, both hemispheres 23.3
2278 Female, age 85, right hemisphere 23.1
2708 Female, age 91, both hemispheres 23.1
Spinal trigeminal nucleus, caudal
nTPM: 25.3
2279 Male, age 61, both hemispheres 27.1
2447 Male, age 76, both hemispheres 27.1
2733 Male, age 76, both hemispheres 26.4
2390 Female, age 91, both hemispheres 25.0
2642 Male, age 74, both hemispheres 23.5
2711 Male, age 80, both hemispheres 23.0
Spinal trigeminal nucleus, interpolar
nTPM: 26.5
2625 Male, age 61, both hemispheres 34.8
2066 Male, age 76, right hemisphere 28.7
2287 Male, age 74, right hemisphere 26.2
2033 Male, age 80, both hemispheres 24.6
2386 Female, age 85, both hemispheres 24.3
2760 Female, age 85, both hemispheres 24.2
2389 Female, age 91, both hemispheres 22.6
Spinal trigeminal nucleus, oral
nTPM: 23.8
2737 Female, age 85, both hemispheres 24.6
2164 Male, age 80, both hemispheres 23.6
1978 Male, age 76, both hemispheres 23.1
Spinal vestibular nucleus
nTPM: 26.1
2796 Male, age 61, both hemispheres 35.6
2748 Male, age 76, both hemispheres 27.2
2780 Male, age 80, both hemispheres 24.6
2186 Female, age 91, both hemispheres 24.3
2806 Female, age 85, both hemispheres 22.9
2384 Male, age 74, both hemispheres 21.8
Subcoeruleus area
nTPM: 24.0
2268 Female, age 91, left hemisphere 26.3
1958 Male, age 80, both hemispheres 25.1
2369 Female, age 85, left hemisphere 24.4
2089 Male, age 76, left hemisphere 22.1
2451 Male, age 74, both hemispheres 22.1
Superior olive
nTPM: 24.3
1875 Female, age 85, both hemispheres 27.0
2364 Male, age 74, right hemisphere 25.3
2020 Male, age 76, both hemispheres 23.9
2561 Female, age 91, both hemispheres 23.5
2262 Male, age 80, right hemisphere 21.8
Superior vestibular nucleus
nTPM: 22.7
2303 Male, age 80, both hemispheres 23.7
2061 Male, age 76, both hemispheres 22.7
2015 Male, age 80, both hemispheres 22.4
2383 Male, age 74, both hemispheres 22.0
Ventral medullary reticular nucleus
nTPM: 23.9
2060 Male, age 76, both hemispheres 25.7
2372 Male, age 61, both hemispheres 22.1
Ventral periolivary nuclei
nTPM: 26.6
2130 Female, age 85, both hemispheres 28.6
2023 Male, age 76, both hemispheres 27.6
2165 Male, age 80, both hemispheres 26.1
2794 Female, age 91, left hemisphere 24.0
Ventrolateral medulla, A1/C1 cell groups
nTPM: 24.7
1986 Male, age 76, both hemispheres 27.3
2180 Male, age 61, both hemispheres 24.9
2741 Female, age 85, both hemispheres 24.2
2289 Female, age 91, both hemispheres 24.0
2118 Male, age 80, both hemispheres 23.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 33.1
2359 Male, age 61, both hemispheres 75.9
2840 Female, age 85, both hemispheres 25.9
2449 Male, age 74, both hemispheres 25.4
2161 Male, age 80, both hemispheres 24.8
1959 Male, age 76, both hemispheres 23.7
2456 Female, age 91, both hemispheres 23.0

PONS AND MEDULLA - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 73.7
FF:10182-103D2 60 years, female 85.5
FF:10165-103B3 76 years, female 61.9
Medulla oblongata
Scaled Tags Per Million: 67.5
FF:10174-103C3 60 years, female 75.2
FF:10038-101F2 18-64 years, mixed 74.7
FF:10155-103A2 76 years, female 52.7
Pons
Scaled Tags Per Million: 97.0
FF:10033-101E6 18-54 years, mixed 97.0

PONS AND MEDULLA - Pig RNA-seqi
Average nTPM 26.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 22.5
Samples: 4

Max nTPM: 23.2
Min nTPM: 21.3
Sample A Female 22.6
Sample B Female 22.9
Sample C Male 23.2
Sample D Male 21.3
Pons
nTPM: 26.4
Samples: 4

Max nTPM: 33.9
Min nTPM: 18.8
Sample A Female 33.9
Sample B Female 18.8
Sample C Male 23.5
Sample D Male 29.5

PONS AND MEDULLA - Mouse RNA-seqi
Average nTPM 57.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 57.1
Samples: 4

Max nTPM: 66.3
Min nTPM: 50.3
Sample A Male 53.1
Sample B Male 50.3
Sample C Female 66.3
Sample D Female 58.7

PONS AND MEDULLA - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 7.9
199198 Antisense, RP_040604_02_C11, Mouse strain C57BL/6J (56 days, male) 7.9
Pons
Expression energy: 12.6
199198 Antisense, RP_040604_02_C11, Mouse strain C57BL/6J (56 days, male) 12.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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