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COLON - Expression summary

RNA expressioni
HPA:39.0TPM
GTEx:11.2RPKM
FANTOM5:83.1Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seqi

Average TPM

39.0
overview Male, age 54 Sample 1
TPM: 43.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 40.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 32.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 46.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 20.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 34.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 48.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 40.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 31.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 47.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 47.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 41.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 31.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi

Average RPKM

11.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.9
Samples: 149

Max RPKM: 12.3
Min RPKM: 4.4
Std RPKM: 1.3
Median RPKM: 8.9
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 12.3
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 12.0
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 11.9
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 11.7
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 11.6
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 11.5
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 11.3
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 11.3
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 11.0
GTEX-1122O-1426-SM-5H11R 60-69 years, female 10.9
Show all
Colon - Transverse
RPKM: 12.8
Samples: 196

Max RPKM: 25.4
Min RPKM: 4.3
Std RPKM: 4.2
Median RPKM: 12.1
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 25.4
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 25.1
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 23.4
GTEX-R55G-1226-SM-48FDC 40-49 years, female 22.5
GTEX-P4PP-1426-SM-3NM9L 30-39 years, female 21.4
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 21.3
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 21.2
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 21.0
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 20.7
GTEX-13D11-0826-SM-5KLZJ 50-59 years, female 20.5
Show all

COLON - FANTOM5 CAGEi

Average Tags Per Million

83.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 83.1
FF:10014-101C5 62,83,84 years, mixed 83.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.