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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:27.2 nTPM
FANTOM5:143.6 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 54.0
overview
Male, age 65
Small intestine sample 232
nTPM: 54.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 64.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 44.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 52.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 27.2
Samples: 187

Max nTPM: 83.1
Min nTPM: 8.1
Std nTPM: 17.1
Median nTPM: 20.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 83.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 82.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 78.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 73.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 72.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 65.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 65.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 63.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 63.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 63.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 62.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 60.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 60.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 59.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 58.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 58.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 56.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 55.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 54.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 53.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 53.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 51.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 50.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 50.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 50.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 49.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 49.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 48.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 46.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 45.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 44.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 44.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 43.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 42.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 41.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 41.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 40.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 40.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 40.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 40.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 39.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 39.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 39.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 39.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 38.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 38.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 38.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 37.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 37.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 35.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 35.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 34.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 34.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 33.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 33.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 33.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 32.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 31.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 31.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 31.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 30.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 30.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 29.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 29.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 28.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 28.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 27.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 27.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 27.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 26.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 25.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 25.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 25.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 25.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 25.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 25.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 24.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 24.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 24.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 24.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 24.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 23.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 22.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 22.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 22.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 22.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 22.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 22.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 21.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 21.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 21.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 21.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 21.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 20.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 20.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 19.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 19.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 19.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 18.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 18.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 18.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 18.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 18.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 18.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 18.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 18.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 18.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 18.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 17.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 17.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 17.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 17.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 17.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 17.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 17.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 17.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 16.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 16.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 16.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 16.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 16.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 16.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 16.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 16.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 16.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 15.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 15.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 15.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 15.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 15.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 15.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 14.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 14.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 14.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 14.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 14.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 14.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 14.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 14.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 13.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 13.9
GTEX-1192X-2526-SM-59868 50-59 years, male 13.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 13.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 13.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 13.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 13.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 13.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 13.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 13.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 13.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 13.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 13.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 13.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 13.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 13.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 12.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 12.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 12.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 12.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 12.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 12.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 12.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 12.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 11.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 11.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 11.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 11.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 11.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 11.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 11.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 11.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 10.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 10.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 10.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 10.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 10.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 10.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 9.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 9.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 9.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 9.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 9.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 8.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 8.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 8.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 143.6
FF:10024-101D6 15,40,85 years, mixed 143.6

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