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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:21.2 nTPM
GTEx:21.2 nTPM
FANTOM5:67.8 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:23.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 21.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 21.2
Samples: 105

Max nTPM: 56.5
Min nTPM: 9.8
Std nTPM: 7.8
Median nTPM: 0.0
491_1 89 years, female 56.5
490_1 67 years, female 48.1
139_1 64 years, female 40.8
495_1 57 years, female 40.8
308_1 70 years, female 40.2
307_1 66 years, female 38.4
322_1 76 years, male 34.4
43_1 64 years, female 33.9
17_1 71 years, male 32.9
311_1 78 years, male 30.6
316_1 62 years, male 30.5
6_1 73 years, female 30.0
315_1 62 years, female 28.8
120_1 70 years, female 28.1
501_1 88 years, male 27.9
379_1 60 years, male 27.4
89_1 63 years, male 26.8
2_1 77 years, female 26.5
35_1 74 years, female 25.5
41_1 94 years, female 25.5
117_1 61 years, male 25.5
145_1 84 years, male 25.5
396_1 62 years, male 25.5
413_1 59 years, female 25.5
313_1 79 years, female 25.4
173_1 67 years, male 25.2
518_1 75 years, female 25.2
466_1 57 years, female 25.1
137_1 83 years, male 25.0
348_1 84 years, male 24.7
162_1 79 years, female 24.6
386_1 76 years, male 23.7
142_1 61 years, female 23.5
4_1 88 years, female 23.2
81_1 67 years, male 23.0
149_1 88 years, male 22.9
375_1 74 years, female 22.6
447_1 81 years, male 22.6
314_1 67 years, male 22.1
347_1 72 years, male 22.0
119_1 70 years, female 21.9
324_1 76 years, male 21.6
415_1 77 years, female 21.1
109_1 81 years, female 20.7
42_1 85 years, male 20.6
18_1 88 years, male 20.1
218_1 71 years, female 20.1
384_1 83 years, male 19.3
295_1 61 years, female 19.2
266_1 85 years, male 19.1
32_1 67 years, male 18.9
452_1 88 years, female 18.9
288_1 66 years, female 18.8
351_1 91 years, male 18.7
126_1 63 years, male 18.6
217_1 76 years, male 18.2
414_1 84 years, female 18.2
254_1 77 years, female 18.0
354_1 81 years, female 18.0
153_1 70 years, female 17.6
229_1 69 years, female 17.6
9_1 66 years, female 17.5
286_1 68 years, female 17.5
265_1 87 years, male 17.3
243_1 75 years, male 16.9
319_1 81 years, male 16.9
320_1 89 years, female 16.9
468_1 89 years, male 16.9
389_1 86 years, female 16.8
499_1 55 years, female 16.6
264_1 73 years, female 16.5
237_1 82 years, male 16.4
335_1 73 years, female 16.4
480_1 63 years, male 16.4
377_1 82 years, female 16.3
350_1 84 years, female 16.2
291_1 76 years, male 16.0
251_1 78 years, male 15.9
189_1 76 years, male 15.8
318_1 68 years, male 15.7
321_1 62 years, female 15.4
353_1 82 years, female 15.2
526_1 61 years, male 15.2
293_1 68 years, female 15.1
404_1 82 years, female 15.1
246_1 77 years, male 15.0
349_1 83 years, male 15.0
376_1 75 years, female 14.8
405_1 91 years, male 14.8
317_1 60 years, male 14.7
292_1 71 years, male 14.6
425_1 59 years, female 14.5
115_1 83 years, male 14.4
406_1 79 years, male 14.4
352_1 62 years, male 14.3
355_1 70 years, female 14.3
517_1 88 years, male 13.8
172_1 72 years, female 13.6
177_1 74 years, male 13.4
394_1 75 years, female 13.2
99_1 64 years, male 12.8
503_1 68 years, male 12.2
506_1 65 years, male 11.9
163_1 78 years, male 11.3
356_1 87 years, female 9.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 67.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 67.8
FF:10030-101E3 24-65 years, mixed 67.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 23.1
Pig sample Sample description nTPM
Retina
nTPM: 23.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 22.7
Sample A Female 23.1
Sample B Female 23.5
Sample C Male 22.7
Sample D Male 23.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 23.9
Mouse sample Sample description nTPM
Retina
nTPM: 24.0
Samples: 4

Max nTPM: 27.1
Min nTPM: 20.4
Sample A Male 23.0
Sample B Male 25.3
Sample C Female 20.4
Sample D Female 27.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.