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SLC9A3R2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Medium
Goblet cells: Not detected
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:81.2 nTPM
HPA:32.0 nTPM
GTEx:81.2 nTPM
FANTOM5:49.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001672Antibody HPA066520
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -Medium
Glandular cells Medium-
Goblet cells -Not detected
Paneth cells -Not detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 32.0
overview
Male, age 65
Small intestine sample 232
nTPM: 24.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 39
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 38.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 25.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 81.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 81.2
Samples: 187

Max nTPM: 273.8
Min nTPM: 25.9
Std nTPM: 43.5
Median nTPM: 67.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 273.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 263.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 261.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 237.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 209.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 190.7
GTEX-1192X-2526-SM-59868 50-59 years, male 180.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 180.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 176.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 175.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 171.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 169.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 168.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 159.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 142.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 142.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 141.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 140.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 138.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 135.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 135.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 133.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 127.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 122.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 119.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 113.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 112.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 111.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 111.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 110.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 109.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 109.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 104.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 104.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 104.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 104.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 104.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 103.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 101.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 100.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 99.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 99.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 96.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 96.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 96.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 95.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 95.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 93.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 92.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 92.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 91.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 89.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 88.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 88.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 87.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 87.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 86.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 86.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 86.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 84.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 84.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 84.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 84.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 83.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 82.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 81.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 79.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 79.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 78.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 78.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 77.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 77.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 77.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 77.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 77.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 75.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 74.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 74.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 74.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 73.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 73.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 72.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 72.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 72.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 71.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 71.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 70.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 70.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 69.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 68.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 68.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 68.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 68.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 67.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 66.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 66.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 65.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 65.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 65.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 64.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 64.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 64.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 64.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 64.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 64.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 63.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 63.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 63.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 63.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 62.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 62.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 62.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 62.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 61.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 61.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 60.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 60.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 60.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 60.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 60.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 59.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 59.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 58.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 58.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 57.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 57.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 57.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 57.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 56.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 56.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 55.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 55.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 55.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 55.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 55.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 55.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 54.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 54.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 54.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 54.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 54.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 53.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 53.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 53.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 52.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 52.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 52.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 51.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 51.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 51.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 50.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 50.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 50.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 50.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 49.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 49.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 49.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 49.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 49.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 48.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 47.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 47.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 46.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 46.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 45.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 45.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 45.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 45.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 45.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 44.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 43.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 43.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 43.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 43.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 43.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 42.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 41.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 39.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 38.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 38.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 37.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 36.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 33.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 31.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 27.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 27.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 25.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 49.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 49.4
FF:10024-101D6 15,40,85 years, mixed 49.4

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