MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.5 nTPM
HPA:6.5 nTPM
GTEx:3.7 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:33.4 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.7
2219 Male, age 76, both hemispheres 6.0
2828 Female, age 72, unknown 6.0
2019 Male, age 18, unknown 5.6
2411 Female, age 72, unknown 5.6
1827 Male, age 72, unknown 5.5
2666 Male, age 74, left hemisphere 3.9
1830 Male, age 51, unknown 3.8
1833 Male, age 53, unknown 3.7
1870 Female, age 42, unknown 3.5
2586 Male, age 75, left hemisphere 2.9
Dorsal raphe nucleus
nTPM: 4.0
2047 Male, age 72, unknown 5.0
1828 Male, age 53, unknown 4.5
2750 Male, age 76, both hemispheres 4.1
2298 Female, age 72, unknown 3.3
2016 Female, age 72, unknown 3.0
Inferior colliculus
nTPM: 4.5
2097 Female, age 72, unknown 5.9
1890 Male, age 53, unknown 4.5
1848 Female, age 42, unknown 4.1
2849 Male, age 72, unknown 3.3
Median raphe nucleus
nTPM: 6.1
2220 Male, age 76, midline 6.1
Pedunculopontine tegmental nucleus
nTPM: 3.5
2334 Male, age 80, both hemispheres 4.4
1921 Female, age 85, both hemispheres 3.2
2338 Male, age 61, both hemispheres 2.8
Periaquaductal grey, anterior
nTPM: 6.5
1947 Male, age 18, unknown 7.4
1795 Male, age 51, unknown 6.5
2502 Female, age 75, unknown 5.8
Periaquaductal grey, dorsal
nTPM: 2.9
2850 Male, age 76, both hemispheres 3.4
1840 Male, age 53, unknown 2.9
2464 Female, age 72, unknown 2.6
1831 Male, age 72, unknown 2.5
Periaquaductal grey, lateral
nTPM: 3.2
2272 Male, age 74, both hemispheres 4.1
2140 Male, age 76, both hemispheres 2.9
2053 Male, age 18, unknown 2.5
Pretectal area
nTPM: 4.9
2007 Male, age 72, unknown 8.0
1816 Male, age 51, unknown 7.3
1815 Male, age 53, unknown 7.2
1817 Female, age 42, unknown 6.3
1944 Female, age 72, unknown 5.8
2407 Male, age 75, both hemispheres 3.9
2224 Female, age 72, unknown 3.5
2825 Male, age 18, unknown 3.4
2273 Male, age 74, both hemispheres 3.0
2316 Male, age 76, right hemisphere 2.9
2667 Female, age 75, unknown 2.9
Red nucleus
nTPM: 4.3
2785 Male, age 18, unknown 6.5
2503 Female, age 72, unknown 5.5
2584 Male, age 75, left hemisphere 5.1
2227 Male, age 72, unknown 4.6
1821 Female, age 72, unknown 4.4
1954 Female, age 42, unknown 4.4
2725 Female, age 75, unknown 4.3
1904 Male, age 53, unknown 4.0
1865 Male, age 51, unknown 3.7
2823 Male, age 76, right hemisphere 3.6
2588 Male, age 74, left hemisphere 2.9
2769 Male, age 72, unknown 2.9
Substantia nigra
nTPM: 4.3
2590 Female, age 75, unknown 5.8
1889 Female, age 72, unknown 5.0
1916 Female, age 42, unknown 5.0
1941 Male, age 53, unknown 4.7
2583 Male, age 75, right hemisphere 4.7
2665 Male, age 74, both hemispheres 4.6
1851 Male, age 51, unknown 4.3
2409 Female, age 72, unknown 3.3
2241 Male, age 72, unknown 3.2
2699 Male, age 18, unknown 2.7
Superior colliculus
nTPM: 3.9
2087 Female, age 72, unknown 5.4
2587 Male, age 74, left hemisphere 5.2
2668 Female, age 75, unknown 5.1
1796 Male, age 53, unknown 4.4
2261 Male, age 18, unknown 4.0
1913 Female, age 42, unknown 3.5
1839 Male, age 51, unknown 3.3
1895 Male, age 76, right hemisphere 3.1
1995 Male, age 72, unknown 2.9
2664 Male, age 75, both hemispheres 2.4
Ventral tegmental area
nTPM: 4.2
2410 Female, age 72, unknown 6.0
2218 Male, age 76, both hemispheres 5.6
1942 Male, age 51, unknown 4.0
2223 Female, age 72, unknown 4.0
1915 Female, age 42, unknown 3.7
2021 Male, age 53, unknown 1.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.7
Samples: 139

Max nTPM: 7.8
Min nTPM: 0.1
Std nTPM: 1.2
Median nTPM: 3.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 7.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 6.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 6.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 6.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 6.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 5.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.2
FF:10158-103A5 76 years, female 35.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.9
Pig sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 28.8
Min nTPM: 23.9
Sample A Female 26.5
Sample B Female 24.9
Sample C Male 28.8
Sample D Male 23.9
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 22.0
Min nTPM: 20.7
Sample B Female 22.0
Sample C Male 20.7
Sample D Male 20.8
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 27.5
Min nTPM: 21.9
Sample A Female 27.5
Sample B Female 21.9
Sample C Male 25.4
Sample D Male 24.5
Superior colliculi
nTPM: 26.9
Samples: 4

Max nTPM: 30.9
Min nTPM: 24.4
Sample A Female 24.4
Sample B Female 26.2
Sample C Male 30.9
Sample D Male 26.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 36.3
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 36.2
Sample C Female 36.3
Sample D Female 33.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
77620265 Antisense, RP_070129_05_E04, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.