BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:80.5 nTPM
HPA:80.5 nTPM
GTEx:35.9 nTPM
FANTOM5:104.2 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:46.9 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028900Antibody CAB002508
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 80.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.8
2288 Male, age 75, left hemisphere 50.2
2481 Female, age 94, left hemisphere 45.3
1854 Male, age 80, left hemisphere 39.6
2846 Female, age 79, unknown 39.0
1857 Female, age 85, left hemisphere 35.3
1781 Male, age 74, unknown 34.6
2290 Female, age 72, unknown 33.2
2289 Male, age 61, right hemisphere 32.7
Claustrum
nTPM: 38.6
2292 Female, age 85, both hemispheres 54.2
2392 Female, age 94, both hemispheres 48.0
1956 Male, age 74, unknown 38.3
2198 Male, age 80, both hemispheres 37.5
2491 Male, age 75, both hemispheres 37.1
2568 Male, age 61, both hemispheres 35.5
2196 Female, age 79, unknown 33.0
2645 Female, age 72, unknown 32.1
2284 Female, age 91, both hemispheres 31.8
Globus pallidus, externus
nTPM: 80.5
1996 Male, age 80, right hemisphere 105.3
2567 Female, age 72, unknown 87.3
2646 Male, age 61, right hemisphere 85.8
2772 Female, age 79, unknown 74.6
2395 Male, age 75, both hemispheres 49.7
Globus pallidus, internus
nTPM: 69.7
2566 Female, age 72, unknown 82.0
2037 Male, age 80, right hemisphere 80.2
1818 Male, age 74, unknown 71.0
2111 Female, age 85, right hemisphere 66.2
2287 Male, age 75, right hemisphere 65.5
2778 Female, age 91, both hemispheres 63.5
2483 Female, age 94, right hemisphere 59.2
Nucleus accumbens
nTPM: 40.2
2732 Male, age 80, right hemisphere 55.1
2391 Female, age 94, left hemisphere 54.3
2286 Male, age 75, left hemisphere 46.2
2698 Female, age 72, unknown 41.4
1806 Female, age 85, left hemisphere 39.1
1783 Male, age 74, unknown 32.6
2824 Male, age 61, right hemisphere 28.2
1856 Female, age 91, right hemisphere 24.5
Nucleus basalis of Meynert
nTPM: 47.3
2569 Male, age 61, both hemispheres 76.0
2484 Female, age 94, left hemisphere 39.6
2393 Male, age 80, right hemisphere 38.1
2821 Male, age 75, both hemispheres 35.3
Nucleus of the diagonal band
nTPM: 23.6
1979 Male, age 74, unknown 30.5
1812 Female, age 91, both hemispheres 24.4
2195 Female, age 85, both hemispheres 22.5
2775 Male, age 80, right hemisphere 20.5
2029 Male, age 61, right hemisphere 20.2
Olfactory tubercle
nTPM: 23.8
2856 Male, age 75, right hemisphere 25.4
1846 Male, age 80, right hemisphere 24.3
1998 Female, age 91, both hemispheres 23.3
2487 Female, age 94, left hemisphere 22.3
Putamen
nTPM: 36.3
2482 Female, age 94, left hemisphere 43.8
2647 Male, age 75, left hemisphere 41.4
1829 Male, age 74, unknown 39.5
2489 Female, age 72, unknown 38.7
2466 Female, age 79, unknown 33.7
1937 Female, age 91, right hemisphere 30.2
1838 Male, age 80, right hemisphere 26.6
Septal nuclei
nTPM: 32.9
2394 Male, age 61, left hemisphere 56.1
2199 Male, age 80, right hemisphere 41.0
2059 Female, age 85, both hemispheres 35.9
2629 Female, age 94, right hemisphere 30.5
2009 Female, age 91, both hemispheres 26.0
2031 Female, age 72, unknown 20.9
1960 Male, age 74, unknown 20.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.0
Samples: 246

Max nTPM: 80.5
Min nTPM: 7.0
Std nTPM: 11.5
Median nTPM: 30.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 80.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 73.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 66.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 60.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 59.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 59.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 58.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 56.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 56.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 55.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 55.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 154.8
Min nTPM: 8.0
Std nTPM: 12.8
Median nTPM: 21.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 154.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 91.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 59.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 54.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 53.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 50.6
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 43.6
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 43.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 41.0
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 40.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 39.7
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Brain - Putamen (basal ganglia)
Average nTPM: 35.9
Samples: 205

Max nTPM: 105.6
Min nTPM: 9.7
Std nTPM: 13.5
Median nTPM: 34.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 105.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 93.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 68.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 67.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 67.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 64.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 64.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 63.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 62.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 61.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 59.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.3
FF:10164-103B2 76 years, female 30.3
Globus pallidus
Scaled Tags Per Million: 104.2
FF:10175-103C4 60 years, female 143.6
FF:10161-103A8 76 years, female 64.8
Nucleus accumbens
Scaled Tags Per Million: 38.0
FF:10037-101F1 23-56 years, mixed 38.0
Putamen
Scaled Tags Per Million: 33.1
FF:10176-103C5 60 years, female 33.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.8
Pig sample Sample description nTPM
Caudate
nTPM: 9.4
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 9.0
Sample C Male 10.8
Sample D Male 9.6
Putamen
nTPM: 13.8
Samples: 4

Max nTPM: 17.2
Min nTPM: 8.8
Sample A Female 16.4
Sample B Female 8.8
Sample C Male 12.9
Sample D Male 17.2
Septum
nTPM: 11.6
Samples: 4

Max nTPM: 14.1
Min nTPM: 8.7
Sample A Female 11.5
Sample B Female 8.7
Sample C Male 14.1
Sample D Male 12.0
Ventral pallidum
nTPM: 13.8
Samples: 4

Max nTPM: 18.6
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 11.9
Sample C Male 18.6
Sample D Male 16.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 44.6
Samples: 4

Max nTPM: 48.1
Min nTPM: 41.7
Sample A Male 48.1
Sample B Male 41.7
Sample C Female 44.1
Sample D Female 44.3
Septum
nTPM: 46.9
Samples: 4

Max nTPM: 61.6
Min nTPM: 29.4
Sample A Male 29.4
Sample B Male 41.3
Sample C Female 61.6
Sample D Female 55.3
Ventral forebrain
nTPM: 22.9
Samples: 4

Max nTPM: 27.5
Min nTPM: 21.1
Sample A Male 21.1
Sample B Male 21.5
Sample C Female 27.5
Sample D Female 21.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
69735676 Antisense, RP_050503_03_C07, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 0.9
69735676 Antisense, RP_050503_03_C07, Mouse strain C57BL/6J (56 days, male) 0.9

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