We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
IGSF9
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • IGSF9
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:34.8 nTPM
GTEx:34.8 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:15.4 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 34.8
Samples: 105

Max nTPM: 114.0
Min nTPM: 2.3
Std nTPM: 21.3
Median nTPM: 0.0
163_1 78 years, male 114.0
352_1 62 years, male 109.1
356_1 87 years, female 87.8
354_1 81 years, female 78.4
319_1 81 years, male 72.5
503_1 68 years, male 68.7
218_1 71 years, female 64.8
355_1 70 years, female 63.7
172_1 72 years, female 63.2
286_1 68 years, female 61.8
349_1 83 years, male 61.0
394_1 75 years, female 60.6
353_1 82 years, female 59.8
377_1 82 years, female 59.4
406_1 79 years, male 58.8
295_1 61 years, female 58.2
350_1 84 years, female 57.3
376_1 75 years, female 55.6
335_1 73 years, female 54.3
321_1 62 years, female 53.8
320_1 89 years, female 51.8
351_1 91 years, male 51.4
517_1 88 years, male 51.0
316_1 62 years, male 49.4
243_1 75 years, male 48.9
318_1 68 years, male 48.5
452_1 88 years, female 47.7
425_1 59 years, female 45.5
292_1 71 years, male 45.3
480_1 63 years, male 45.2
506_1 65 years, male 44.5
229_1 69 years, female 44.2
177_1 74 years, male 43.8
379_1 60 years, male 42.9
6_1 73 years, female 42.7
386_1 76 years, male 42.0
389_1 86 years, female 41.0
404_1 82 years, female 40.8
375_1 74 years, female 40.2
447_1 81 years, male 40.0
237_1 82 years, male 39.4
293_1 68 years, female 38.0
251_1 78 years, male 37.8
189_1 76 years, male 37.7
405_1 91 years, male 36.6
153_1 70 years, female 35.1
291_1 76 years, male 34.5
526_1 61 years, male 34.3
115_1 83 years, male 33.3
264_1 73 years, female 32.3
468_1 89 years, male 31.9
173_1 67 years, male 31.2
347_1 72 years, male 31.1
384_1 83 years, male 30.9
246_1 77 years, male 30.1
99_1 64 years, male 29.7
348_1 84 years, male 29.2
396_1 62 years, male 28.9
266_1 85 years, male 28.6
317_1 60 years, male 28.2
322_1 76 years, male 27.1
9_1 66 years, female 26.0
137_1 83 years, male 25.2
217_1 76 years, male 25.2
35_1 74 years, female 24.8
311_1 78 years, male 24.7
126_1 63 years, male 24.0
518_1 75 years, female 23.4
254_1 77 years, female 22.3
18_1 88 years, male 22.2
265_1 87 years, male 21.9
499_1 55 years, female 21.7
2_1 77 years, female 21.5
145_1 84 years, male 20.1
109_1 81 years, female 19.9
288_1 66 years, female 19.8
142_1 61 years, female 19.7
313_1 79 years, female 19.1
120_1 70 years, female 18.7
314_1 67 years, male 18.6
117_1 61 years, male 18.5
4_1 88 years, female 17.8
81_1 67 years, male 17.2
17_1 71 years, male 17.1
42_1 85 years, male 16.6
324_1 76 years, male 16.5
162_1 79 years, female 15.0
307_1 66 years, female 14.8
139_1 64 years, female 13.7
32_1 67 years, male 13.1
415_1 77 years, female 12.0
43_1 64 years, female 11.9
41_1 94 years, female 11.7
466_1 57 years, female 11.1
414_1 84 years, female 10.9
315_1 62 years, female 9.4
119_1 70 years, female 9.3
89_1 63 years, male 9.1
495_1 57 years, female 8.6
149_1 88 years, male 7.9
413_1 59 years, female 5.2
501_1 88 years, male 4.9
490_1 67 years, female 4.6
308_1 70 years, female 4.4
491_1 89 years, female 2.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 31.7
FF:10030-101E3 24-65 years, mixed 31.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.8
Pig sample Sample description nTPM
Retina
nTPM: 18.8
Samples: 4

Max nTPM: 21.1
Min nTPM: 17.1
Sample A Female 17.3
Sample B Female 17.1
Sample C Male 21.1
Sample D Male 19.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.4
Mouse sample Sample description nTPM
Retina
nTPM: 15.4
Samples: 4

Max nTPM: 17.9
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 17.9
Sample C Female 15.8
Sample D Female 15.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.