We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CTTN
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CTTN
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:28.3 nTPM
HPA:28.3 nTPM
GTEx:58.4 nTPM
FANTOM5:104.9 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:64.9 nTPM
Allen mouse:5.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 28.3
Sample id Sample description nTPM
Amygdala
nTPM: 26.6
2695 Female, age 67, right hemisphere 27.8
2814 Male, age 76, right hemisphere 27.3
2517 Female, age 94, left hemisphere 26.7
1987 Female, age 91, left hemisphere 26.1
2514 Male, age 75, right hemisphere 25.3
Basal amygdala
nTPM: 27.8
2827 Female, age 67, right hemisphere 29.0
2685 Female, age 94, left hemisphere 28.9
2110 Male, age 80, left hemisphere 28.0
2609 Male, age 75, right hemisphere 27.2
2243 Female, age 91, right hemisphere 27.0
1955 Male, age 76, both hemispheres 26.7
Central amygdala
nTPM: 27.8
2515 Male, age 75, right hemisphere 29.9
1905 Male, age 76, both hemispheres 28.3
2239 Male, age 80, left hemisphere 27.3
2826 Female, age 94, left hemisphere 27.3
2701 Female, age 91, right hemisphere 25.9
Corticomedial amygdala
nTPM: 26.8
2829 Male, age 80, left hemisphere 28.1
2428 Male, age 75, right hemisphere 27.2
2242 Female, age 91, right hemisphere 27.0
2429 Female, age 94, left hemisphere 27.0
2535 Female, age 67, right hemisphere 26.4
2240 Male, age 76, both hemispheres 25.3
Lateral amygdala
nTPM: 28.3
2830 Female, age 67, right hemisphere 30.9
2516 Male, age 75, right hemisphere 28.5
1883 Male, age 76, both hemispheres 28.1
2256 Male, age 80, left hemisphere 27.8
2534 Female, age 94, left hemisphere 27.4
2255 Female, age 91, right hemisphere 26.9
Stria terminalis, bed nucleus
nTPM: 25.2
2486 Female, age 94, both hemispheres 26.3
1974 Female, age 91, both hemispheres 25.7
2201 Male, age 74, unknown 23.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 58.4
Samples: 152

Max nTPM: 94.2
Min nTPM: 35.3
Std nTPM: 10.8
Median nTPM: 57.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 94.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 89.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 87.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 86.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 82.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 76.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 75.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 75.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 75.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 75.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 72.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 72.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 72.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 72.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 71.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 71.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 70.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 69.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 69.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 69.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 69.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 69.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 69.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 68.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 68.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 68.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 68.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 67.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 67.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 66.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 66.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 65.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 65.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 65.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 64.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 64.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 64.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 63.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 63.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 63.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 62.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 62.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 62.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 62.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 62.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 62.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 62.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 61.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 61.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 60.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 60.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 60.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 59.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 59.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 59.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 59.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 59.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 58.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 58.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 58.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 58.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 58.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 58.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 57.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 57.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 57.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 57.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 57.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 57.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 57.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 57.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 57.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 57.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 56.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 56.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 56.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 56.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 55.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 55.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 55.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 54.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 54.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 54.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 53.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 53.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 53.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 53.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 52.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 52.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 52.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 52.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 51.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 51.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 51.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 51.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 50.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 50.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 50.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 50.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 50.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 50.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 50.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 49.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 49.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 49.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 49.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 49.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 49.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 49.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 48.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 48.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 48.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 48.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 48.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 47.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 47.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 47.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 46.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 46.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 45.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 45.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 45.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 45.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 45.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 44.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 44.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 44.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 44.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 42.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 41.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 40.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 40.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 37.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 36.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 35.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 104.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 104.9
FF:10151-102I7 76 years, female 104.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.9
Pig sample Sample description nTPM
Amygdala
nTPM: 19.9
Samples: 4

Max nTPM: 24.5
Min nTPM: 17.9
Sample A Female 24.5
Sample B Female 17.9
Sample C Male 18.4
Sample D Male 18.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 64.9
Samples: 4

Max nTPM: 69.0
Min nTPM: 59.9
Sample A Male 69.0
Sample B Male 66.7
Sample C Female 59.9
Sample D Female 63.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.3
70616018 Antisense, RP_050725_01_D11, Mouse strain C57BL/6J (56 days, male) 9.4
564759 Antisense, RP_040826_01_D04, Mouse strain C57BL/6J (56 days, male) 4.4
70919382 Antisense, RP_050713_01_C01, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.