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TISSUE PRIMARY DATA THALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:32.4 nTPM
HPA:32.4 nTPM
FANTOM5:58.3 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:33.6 nTPM
Allen mouse:0.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 23.3
2032 Female, age 42, unknown 29.6
2497 Male, age 66, unknown 26.5
2396 Male, age 61, right hemisphere 13.9
Centromedial thalamic nucleus
nTPM: 30.0
2401 Male, age 76, right hemisphere 33.3
2279 Female, age 85, left hemisphere 26.7
Habenula
nTPM: 26.0
1957 Male, age 80, both hemispheres 33.2
2203 Male, age 61, left hemisphere 31.5
2252 Male, age 62, unknown 19.8
2276 Male, age 66, unknown 19.7
Lateral geniculate body
nTPM: 32.4
2106 Female, age 67, right hemisphere 40.3
2399 Male, age 61, left hemisphere 36.5
1953 Male, age 62, unknown 33.4
2575 Female, age 94, right hemisphere 32.4
2035 Female, age 72, unknown 31.5
2659 Male, age 66, unknown 31.1
2857 Male, age 74, right hemisphere 27.3
2841 Male, age 80, both hemispheres 26.4
Lateral thalamic nuclei
nTPM: 28.2
2765 Female, age 67, both hemispheres 32.9
2577 Male, age 74, both hemispheres 30.0
2573 Female, age 94, left hemisphere 29.6
1903 Male, age 76, left hemisphere 26.3
2661 Female, age 72, unknown 22.0
Medial dorsal thalamic nucleus
nTPM: 25.6
1859 Male, age 76, both hemispheres 33.0
1810 Male, age 48, unknown 32.3
2572 Female, age 94, right hemisphere 31.8
1971 Male, age 61, right hemisphere 28.4
2402 Female, age 67, both hemispheres 27.2
2283 Male, age 80, right hemisphere 24.4
2576 Male, age 74, both hemispheres 23.8
2660 Female, age 72, unknown 23.6
1930 Female, age 42, unknown 22.6
2039 Female, age 72, unknown 22.1
2026 Male, age 62, unknown 21.7
2498 Male, age 66, unknown 21.6
2492 Male, age 75, right hemisphere 20.0
Medial geniculate body
nTPM: 25.6
1811 Female, age 42, unknown 33.2
2571 Male, age 75, right hemisphere 30.9
2650 Female, age 94, left hemisphere 25.4
2657 Male, age 74, right hemisphere 24.2
2049 Male, age 76, both hemispheres 23.3
2207 Male, age 80, right hemisphere 22.0
2217 Female, age 72, unknown 20.1
Nucleus reuniens
nTPM: 24.2
2210 Female, age 85, left hemisphere 26.4
2212 Female, age 67, left hemisphere 23.2
2205 Male, age 80, left hemisphere 22.9
Nucleus rhomboideus
nTPM: 24.3
2206 Male, age 80, both hemispheres 25.7
2280 Female, age 85, left hemisphere 24.9
2213 Female, age 67, left hemisphere 22.1
Posterior thalamic nucleus
nTPM: 30.7
2649 Female, age 94, both hemispheres 46.8
2266 Male, age 76, right hemisphere 29.8
2655 Male, age 74, right hemisphere 25.1
2495 Female, age 67, right hemisphere 21.0
Pulvinar
nTPM: 27.4
2398 Male, age 61, left hemisphere 33.3
1972 Male, age 62, unknown 32.2
2214 Male, age 76, right hemisphere 28.7
2496 Female, age 67, right hemisphere 28.4
1932 Male, age 80, right hemisphere 27.3
1929 Male, age 48, unknown 26.6
2724 Male, age 74, right hemisphere 25.6
1899 Female, age 42, unknown 24.7
2499 Male, age 66, unknown 23.8
2582 Female, age 72, unknown 23.5
Subthalamic nucleus
nTPM: 26.9
2124 Male, age 62, unknown 33.2
2658 Male, age 74, both hemispheres 33.1
2275 Male, age 66, unknown 31.0
2056 Female, age 72, unknown 27.9
2282 Male, age 61, both hemispheres 25.5
2779 Female, age 42, unknown 25.1
2406 Female, age 72, unknown 21.2
2216 Male, age 48, unknown 18.0
Ventral posterolateral thalamic nucleus
nTPM: 27.5
2740 Male, age 76, right hemisphere 33.7
2578 Male, age 74, both hemispheres 30.0
2570 Male, age 75, right hemisphere 28.3
2397 Male, age 61, right hemisphere 25.4
2581 Female, age 72, unknown 24.6
2197 Male, age 80, both hemispheres 23.1
Ventral posteromedial thalamic nucleus
nTPM: 26.0
2653 Male, age 74, both hemispheres 28.5
2281 Male, age 75, right hemisphere 26.1
2127 Male, age 76, right hemisphere 25.5
2758 Male, age 80, both hemispheres 25.2
2202 Male, age 61, left hemisphere 24.5
Ventral thalamic nuclei
nTPM: 28.5
1860 Male, age 76, both hemispheres 37.2
1845 Male, age 48, unknown 32.4
2580 Male, age 66, unknown 31.5
2652 Male, age 74, left hemisphere 30.4
1912 Female, age 42, unknown 28.3
2858 Female, age 72, unknown 26.2
2285 Male, age 62, unknown 25.2
2204 Male, age 80, both hemispheres 22.5
2291 Female, age 72, unknown 22.4
Ventromedial nucleus
nTPM: 22.7
1982 Female, age 72, unknown 24.2
1822 Female, age 42, unknown 21.2
Zona incerta
nTPM: 26.9
2403 Male, age 62, unknown 31.0
2215 Male, age 66, unknown 30.4
2822 Male, age 74, right hemisphere 29.4
2663 Female, age 72, unknown 23.7
2208 Male, age 80, right hemisphere 20.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 58.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 58.3
FF:10154-103A1 76 years, female 58.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.0
Pig sample Sample description nTPM
Thalamus
nTPM: 44.0
Samples: 4

Max nTPM: 55.8
Min nTPM: 37.6
Sample A Female 37.6
Sample B Female 43.1
Sample C Male 39.4
Sample D Male 55.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 33.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 31.4
Sample A Male 31.4
Sample B Male 34.3
Sample C Female 33.5
Sample D Female 35.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.2
69626693 Antisense, RP_050428_01_B07, Mouse strain C57BL/6J (56 days, male) 0.2

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