MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.3 nTPM
HPA:5.3 nTPM
GTEx:5.6 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:9.5 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.6
2666 Male, age 74, left hemisphere 8.0
2019 Male, age 18, unknown 5.3
1827 Male, age 72, unknown 4.3
2411 Female, age 72, unknown 4.1
2219 Male, age 76, both hemispheres 3.5
1830 Male, age 51, unknown 2.9
1833 Male, age 53, unknown 2.8
2586 Male, age 75, left hemisphere 2.4
2828 Female, age 72, unknown 1.8
1870 Female, age 42, unknown 1.1
Dorsal raphe nucleus
nTPM: 5.2
2298 Female, age 72, unknown 7.4
1828 Male, age 53, unknown 6.2
2750 Male, age 76, both hemispheres 5.6
2047 Male, age 72, unknown 5.0
2016 Female, age 72, unknown 1.8
Inferior colliculus
nTPM: 3.5
2097 Female, age 72, unknown 5.0
1890 Male, age 53, unknown 3.4
2849 Male, age 72, unknown 2.9
1848 Female, age 42, unknown 2.8
Median raphe nucleus
nTPM: 5.3
2220 Male, age 76, midline 5.3
Pedunculopontine tegmental nucleus
nTPM: 5.3
2334 Male, age 80, both hemispheres 7.1
1921 Female, age 85, both hemispheres 6.2
2338 Male, age 61, both hemispheres 2.7
Periaquaductal grey, anterior
nTPM: 3.5
1795 Male, age 51, unknown 4.4
1947 Male, age 18, unknown 3.2
2502 Female, age 75, unknown 2.9
Periaquaductal grey, dorsal
nTPM: 2.8
1831 Male, age 72, unknown 3.6
2464 Female, age 72, unknown 3.3
1840 Male, age 53, unknown 2.8
2850 Male, age 76, both hemispheres 1.7
Periaquaductal grey, lateral
nTPM: 1.7
2053 Male, age 18, unknown 1.9
2140 Male, age 76, both hemispheres 1.8
2272 Male, age 74, both hemispheres 1.4
Pretectal area
nTPM: 5.2
1816 Male, age 51, unknown 10.0
1944 Female, age 72, unknown 9.3
2007 Male, age 72, unknown 8.7
1817 Female, age 42, unknown 8.5
1815 Male, age 53, unknown 6.4
2667 Female, age 75, unknown 3.7
2224 Female, age 72, unknown 3.3
2407 Male, age 75, both hemispheres 2.7
2316 Male, age 76, right hemisphere 2.0
2825 Male, age 18, unknown 2.0
2273 Male, age 74, both hemispheres 0.9
Red nucleus
nTPM: 0.8
2785 Male, age 18, unknown 3.8
2584 Male, age 75, left hemisphere 2.0
1821 Female, age 72, unknown 1.2
2588 Male, age 74, left hemisphere 0.9
2823 Male, age 76, right hemisphere 0.5
2725 Female, age 75, unknown 0.3
2769 Male, age 72, unknown 0.3
1954 Female, age 42, unknown 0.2
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
Substantia nigra
nTPM: 4.4
2409 Female, age 72, unknown 7.5
1916 Female, age 42, unknown 6.9
1889 Female, age 72, unknown 6.4
2241 Male, age 72, unknown 5.2
2665 Male, age 74, both hemispheres 4.9
1851 Male, age 51, unknown 4.7
2583 Male, age 75, right hemisphere 3.4
1941 Male, age 53, unknown 3.1
2590 Female, age 75, unknown 1.1
2699 Male, age 18, unknown 1.0
Superior colliculus
nTPM: 4.1
2668 Female, age 75, unknown 11.4
2087 Female, age 72, unknown 7.2
2261 Male, age 18, unknown 4.3
1895 Male, age 76, right hemisphere 4.2
2664 Male, age 75, both hemispheres 3.9
1796 Male, age 53, unknown 3.6
1839 Male, age 51, unknown 2.1
2587 Male, age 74, left hemisphere 1.9
1913 Female, age 42, unknown 1.3
1995 Male, age 72, unknown 0.9
Ventral tegmental area
nTPM: 3.0
2218 Male, age 76, both hemispheres 4.7
2410 Female, age 72, unknown 4.2
1915 Female, age 42, unknown 3.5
2021 Male, age 53, unknown 3.3
1942 Male, age 51, unknown 2.2
2223 Female, age 72, unknown 0.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 20.8
Min nTPM: 0.0
Std nTPM: 4.6
Median nTPM: 4.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 19.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 15.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 15.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 14.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 13.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 12.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 12.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 4.7
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 2.5
Sample C Male 4.7
Sample D Male 3.6
Periaqueductal gray
nTPM: 2.6
Samples: 3

Max nTPM: 3.3
Min nTPM: 2.2
Sample B Female 2.2
Sample C Male 3.3
Sample D Male 2.3
Substantia nigra
nTPM: 2.6
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.2
Sample A Female 3.6
Sample B Female 2.2
Sample C Male 3.5
Sample D Male 1.2
Superior colliculi
nTPM: 3.7
Samples: 4

Max nTPM: 5.8
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 3.5
Sample C Male 5.8
Sample D Male 3.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.6
Sample A Male 8.6
Sample B Male 8.9
Sample C Female 11.6
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
75828175 Antisense, RP_060601_01_E11, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.