MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA:53.3 nTPM
GTEx:46.9 nTPM
FANTOM5:69.3 Scaled Tags Per Million
Pig:35.8 nTPM
Mouse:40.5 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.2
2586 Male, age 75, left hemisphere 54.8
1870 Female, age 42, unknown 53.0
2411 Female, age 72, unknown 52.6
2019 Male, age 18, unknown 51.7
1830 Male, age 51, unknown 50.1
2828 Female, age 72, unknown 49.9
1833 Male, age 53, unknown 49.6
2666 Male, age 74, left hemisphere 47.9
1827 Male, age 72, unknown 47.5
2219 Male, age 76, both hemispheres 44.7
Dorsal raphe nucleus
nTPM: 45.5
2750 Male, age 76, both hemispheres 50.5
1828 Male, age 53, unknown 45.4
2047 Male, age 72, unknown 44.6
2298 Female, age 72, unknown 43.7
2016 Female, age 72, unknown 43.3
Inferior colliculus
nTPM: 45.9
1890 Male, age 53, unknown 48.4
2097 Female, age 72, unknown 46.1
1848 Female, age 42, unknown 45.2
2849 Male, age 72, unknown 43.8
Median raphe nucleus
nTPM: 45.6
2220 Male, age 76, midline 45.6
Pedunculopontine tegmental nucleus
nTPM: 47.1
2334 Male, age 80, both hemispheres 47.8
1921 Female, age 85, both hemispheres 46.7
2338 Male, age 61, both hemispheres 46.7
Periaquaductal grey, anterior
nTPM: 46.5
1947 Male, age 18, unknown 47.6
2502 Female, age 75, unknown 46.6
1795 Male, age 51, unknown 45.2
Periaquaductal grey, dorsal
nTPM: 43.5
2464 Female, age 72, unknown 45.0
1831 Male, age 72, unknown 44.2
2850 Male, age 76, both hemispheres 42.8
1840 Male, age 53, unknown 41.7
Periaquaductal grey, lateral
nTPM: 44.1
2053 Male, age 18, unknown 47.2
2140 Male, age 76, both hemispheres 43.1
2272 Male, age 74, both hemispheres 42.1
Pretectal area
nTPM: 46.5
2007 Male, age 72, unknown 49.7
1815 Male, age 53, unknown 49.4
1817 Female, age 42, unknown 49.1
2407 Male, age 75, both hemispheres 48.0
2667 Female, age 75, unknown 47.4
1816 Male, age 51, unknown 46.4
1944 Female, age 72, unknown 45.6
2316 Male, age 76, right hemisphere 45.2
2825 Male, age 18, unknown 45.0
2224 Female, age 72, unknown 43.0
2273 Male, age 74, both hemispheres 42.5
Red nucleus
nTPM: 53.3
1865 Male, age 51, unknown 56.2
1904 Male, age 53, unknown 55.2
2588 Male, age 74, left hemisphere 55.2
1821 Female, age 72, unknown 54.1
2584 Male, age 75, left hemisphere 53.8
2769 Male, age 72, unknown 53.7
2227 Male, age 72, unknown 53.2
2503 Female, age 72, unknown 52.4
1954 Female, age 42, unknown 52.0
2785 Male, age 18, unknown 52.0
2725 Female, age 75, unknown 51.4
2823 Male, age 76, right hemisphere 50.3
Substantia nigra
nTPM: 48.0
2583 Male, age 75, right hemisphere 53.3
1851 Male, age 51, unknown 50.8
1889 Female, age 72, unknown 49.1
2590 Female, age 75, unknown 48.8
1916 Female, age 42, unknown 47.7
2409 Female, age 72, unknown 47.0
2665 Male, age 74, both hemispheres 46.9
1941 Male, age 53, unknown 45.7
2241 Male, age 72, unknown 45.4
2699 Male, age 18, unknown 45.4
Superior colliculus
nTPM: 47.5
1913 Female, age 42, unknown 52.6
1995 Male, age 72, unknown 51.1
2664 Male, age 75, both hemispheres 47.8
1796 Male, age 53, unknown 46.9
2668 Female, age 75, unknown 46.7
2587 Male, age 74, left hemisphere 46.6
2261 Male, age 18, unknown 46.4
1895 Male, age 76, right hemisphere 45.9
2087 Female, age 72, unknown 45.5
1839 Male, age 51, unknown 45.4
Ventral tegmental area
nTPM: 49.2
2223 Female, age 72, unknown 55.0
2410 Female, age 72, unknown 52.3
2218 Male, age 76, both hemispheres 47.3
1942 Male, age 51, unknown 47.2
2021 Male, age 53, unknown 47.0
1915 Female, age 42, unknown 46.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 139

Max nTPM: 119.8
Min nTPM: 22.7
Std nTPM: 13.2
Median nTPM: 45.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 100.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 83.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 79.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 72.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 71.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 71.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 69.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 66.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 63.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.3
FF:10158-103A5 76 years, female 69.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.8
Pig sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 54.2
Min nTPM: 27.0
Sample A Female 54.2
Sample B Female 28.0
Sample C Male 34.2
Sample D Male 27.0
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 24.7
Min nTPM: 21.9
Sample B Female 24.7
Sample C Male 22.6
Sample D Male 21.9
Substantia nigra
nTPM: 30.5
Samples: 4

Max nTPM: 34.7
Min nTPM: 24.7
Sample A Female 34.4
Sample B Female 24.7
Sample C Male 28.1
Sample D Male 34.7
Superior colliculi
nTPM: 31.4
Samples: 4

Max nTPM: 33.5
Min nTPM: 27.2
Sample A Female 33.5
Sample B Female 27.2
Sample C Male 32.7
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 38.1
Sample A Male 41.7
Sample B Male 38.1
Sample C Female 39.6
Sample D Female 42.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
532651 Antisense, RP_040825_01_A07, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.