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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:50.1 nTPM
HPA:49.5 nTPM
GTEx:50.1 nTPM
FANTOM5:149.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001306Antibody CAB033665
Glandular cells MediumHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 49.5
overview
Male, age 65
Small intestine sample 232
nTPM: 45.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 54.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 46.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 51.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 50.1
Samples: 187

Max nTPM: 118.4
Min nTPM: 22.1
Std nTPM: 19.3
Median nTPM: 45.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 118.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 113.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 113.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 109.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 97.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 96.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 96.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 94.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 94.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 92.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 92.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 92.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 88.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 86.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 77.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 75.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 75.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 74.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 74.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 74.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 73.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 73.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 73.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 71.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 70.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 70.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 70.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 70.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 70.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 70.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 69.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 69.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 68.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 67.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 66.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 66.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 65.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 64.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 64.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 63.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 62.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 62.8
GTEX-1192X-2526-SM-59868 50-59 years, male 62.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 61.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 60.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 60.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 60.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 59.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 59.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 57.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 57.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 57.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 56.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 56.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 56.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 55.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 55.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 55.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 55.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 54.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 54.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 53.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 53.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 53.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 53.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 52.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 51.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 51.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 51.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 50.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 50.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 50.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 50.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 50.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 49.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 49.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 48.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 48.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 48.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 48.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 48.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 47.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 47.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 47.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 47.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 47.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 47.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 46.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 46.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 46.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 45.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 45.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 45.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 45.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 45.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 45.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 45.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 44.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 44.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 44.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 44.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 44.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 43.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 42.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 42.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 42.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 42.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 42.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 41.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 41.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 41.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 41.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 40.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 40.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 40.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 40.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 40.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 39.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 39.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 39.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 38.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 38.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 38.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 38.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 38.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 37.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 37.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 37.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 37.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 37.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 36.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 36.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 36.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 36.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 36.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 36.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 36.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 35.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 35.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 35.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 35.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 35.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 35.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 35.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 35.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 35.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 35.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 34.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 34.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 34.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 34.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 34.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 33.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 33.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 33.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 33.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 33.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 33.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 33.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 33.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 32.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 32.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 32.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 32.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 31.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 31.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 31.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 30.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 30.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 30.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 30.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 30.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 29.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 29.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 29.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 28.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 28.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 27.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 27.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 27.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 27.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 27.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 27.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 25.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 25.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 22.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 22.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 149.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 149.2
FF:10024-101D6 15,40,85 years, mixed 149.2

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