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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:15.6 nTPM
GTEx:15.6 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:17.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 15.6
Samples: 105

Max nTPM: 27.4
Min nTPM: 9.9
Std nTPM: 2.9
Median nTPM: 0.0
316_1 62 years, male 27.4
322_1 76 years, male 25.4
405_1 91 years, male 22.7
495_1 57 years, female 22.6
163_1 78 years, male 20.7
318_1 68 years, male 19.8
286_1 68 years, female 19.6
311_1 78 years, male 19.6
237_1 82 years, male 19.4
406_1 79 years, male 19.2
218_1 71 years, female 19.1
321_1 62 years, female 19.1
2_1 77 years, female 18.9
335_1 73 years, female 18.9
389_1 86 years, female 18.5
139_1 64 years, female 18.4
499_1 55 years, female 18.2
35_1 74 years, female 18.0
425_1 59 years, female 17.9
466_1 57 years, female 17.9
217_1 76 years, male 17.6
307_1 66 years, female 17.6
172_1 72 years, female 17.5
518_1 75 years, female 17.5
347_1 72 years, male 17.2
320_1 89 years, female 17.0
394_1 75 years, female 17.0
293_1 68 years, female 16.9
43_1 64 years, female 16.8
149_1 88 years, male 16.8
404_1 82 years, female 16.8
447_1 81 years, male 16.8
266_1 85 years, male 16.6
350_1 84 years, female 16.6
153_1 70 years, female 16.5
292_1 71 years, male 16.5
354_1 81 years, female 16.4
375_1 74 years, female 16.4
468_1 89 years, male 16.4
126_1 63 years, male 16.1
355_1 70 years, female 16.0
353_1 82 years, female 15.9
229_1 69 years, female 15.7
251_1 78 years, male 15.7
319_1 81 years, male 15.7
119_1 70 years, female 15.6
246_1 77 years, male 15.6
352_1 62 years, male 15.5
480_1 63 years, male 15.5
137_1 83 years, male 15.4
81_1 67 years, male 15.3
117_1 61 years, male 15.3
517_1 88 years, male 15.3
503_1 68 years, male 15.1
173_1 67 years, male 14.9
379_1 60 years, male 14.9
501_1 88 years, male 14.9
6_1 73 years, female 14.8
313_1 79 years, female 14.8
348_1 84 years, male 14.8
264_1 73 years, female 14.7
145_1 84 years, male 14.5
189_1 76 years, male 14.5
295_1 61 years, female 14.5
356_1 87 years, female 14.5
376_1 75 years, female 14.5
377_1 82 years, female 14.5
291_1 76 years, male 14.4
4_1 88 years, female 14.3
41_1 94 years, female 14.3
109_1 81 years, female 14.3
18_1 88 years, male 14.2
115_1 83 years, male 14.2
413_1 59 years, female 14.2
142_1 61 years, female 14.0
415_1 77 years, female 13.9
32_1 67 years, male 13.8
384_1 83 years, male 13.8
317_1 60 years, male 13.7
526_1 61 years, male 13.5
386_1 76 years, male 13.4
490_1 67 years, female 13.4
42_1 85 years, male 13.2
349_1 83 years, male 13.2
162_1 79 years, female 13.1
89_1 63 years, male 13.0
177_1 74 years, male 13.0
288_1 66 years, female 13.0
396_1 62 years, male 12.9
324_1 76 years, male 12.8
506_1 65 years, male 12.8
308_1 70 years, female 12.7
314_1 67 years, male 12.7
351_1 91 years, male 12.6
414_1 84 years, female 12.6
99_1 64 years, male 12.2
243_1 75 years, male 12.2
254_1 77 years, female 12.0
9_1 66 years, female 11.5
17_1 71 years, male 11.5
265_1 87 years, male 11.3
491_1 89 years, female 10.8
315_1 62 years, female 10.7
452_1 88 years, female 10.2
120_1 70 years, female 9.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 10.4
FF:10030-101E3 24-65 years, mixed 10.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.4
Pig sample Sample description nTPM
Retina
nTPM: 10.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.2
Sample A Female 10.8
Sample B Female 9.2
Sample C Male 10.8
Sample D Male 10.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.7
Mouse sample Sample description nTPM
Retina
nTPM: 17.8
Samples: 4

Max nTPM: 22.4
Min nTPM: 12.8
Sample A Male 17.0
Sample B Male 18.8
Sample C Female 12.8
Sample D Female 22.4

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by the Knut & Alice Wallenberg Foundation.