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LGALS1
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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:38.3 nTPM
GTEx:38.3 nTPM
FANTOM5:261.3 Scaled Tags Per Million
Pig:76.3 nTPM
Mouse:93.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 38.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 38.3
Samples: 105

Max nTPM: 96.2
Min nTPM: 4.8
Std nTPM: 17.9
Median nTPM: 0.0
506_1 65 years, male 96.2
452_1 88 years, female 90.7
163_1 78 years, male 79.3
351_1 91 years, male 74.1
356_1 87 years, female 71.6
353_1 82 years, female 70.8
177_1 74 years, male 66.8
354_1 81 years, female 65.8
243_1 75 years, male 65.1
377_1 82 years, female 62.8
237_1 82 years, male 60.8
321_1 62 years, female 59.8
350_1 84 years, female 59.4
99_1 64 years, male 59.2
376_1 75 years, female 58.9
349_1 83 years, male 57.4
319_1 81 years, male 56.5
264_1 73 years, female 53.7
384_1 83 years, male 53.7
295_1 61 years, female 53.2
352_1 62 years, male 53.0
172_1 72 years, female 51.6
115_1 83 years, male 51.4
447_1 81 years, male 50.2
4_1 88 years, female 49.7
386_1 76 years, male 49.3
394_1 75 years, female 49.2
355_1 70 years, female 49.1
396_1 62 years, male 47.0
320_1 89 years, female 46.6
293_1 68 years, female 46.2
425_1 59 years, female 44.8
218_1 71 years, female 43.8
347_1 72 years, male 43.6
526_1 61 years, male 43.3
480_1 63 years, male 43.2
503_1 68 years, male 42.6
189_1 76 years, male 42.5
322_1 76 years, male 42.2
317_1 60 years, male 42.1
375_1 74 years, female 41.5
292_1 71 years, male 41.3
173_1 67 years, male 41.1
335_1 73 years, female 40.6
318_1 68 years, male 40.3
2_1 77 years, female 40.0
316_1 62 years, male 39.6
286_1 68 years, female 39.3
406_1 79 years, male 39.0
379_1 60 years, male 36.0
307_1 66 years, female 35.7
265_1 87 years, male 35.6
389_1 86 years, female 35.6
405_1 91 years, male 35.6
517_1 88 years, male 35.3
6_1 73 years, female 35.1
404_1 82 years, female 35.0
109_1 81 years, female 34.4
291_1 76 years, male 34.3
348_1 84 years, male 33.6
145_1 84 years, male 33.4
153_1 70 years, female 33.4
251_1 78 years, male 33.0
288_1 66 years, female 32.9
17_1 71 years, male 30.3
254_1 77 years, female 30.1
266_1 85 years, male 30.0
217_1 76 years, male 29.8
137_1 83 years, male 29.7
468_1 89 years, male 29.6
42_1 85 years, male 29.4
142_1 61 years, female 29.4
311_1 78 years, male 29.3
229_1 69 years, female 29.1
313_1 79 years, female 29.0
41_1 94 years, female 28.9
18_1 88 years, male 28.7
314_1 67 years, male 28.6
35_1 74 years, female 28.5
81_1 67 years, male 28.5
117_1 61 years, male 27.2
324_1 76 years, male 26.6
9_1 66 years, female 26.3
119_1 70 years, female 25.2
126_1 63 years, male 25.1
120_1 70 years, female 22.8
308_1 70 years, female 22.8
518_1 75 years, female 22.6
499_1 55 years, female 22.4
246_1 77 years, male 22.0
315_1 62 years, female 16.6
162_1 79 years, female 16.2
139_1 64 years, female 15.4
43_1 64 years, female 15.3
501_1 88 years, male 14.9
89_1 63 years, male 14.2
495_1 57 years, female 12.9
415_1 77 years, female 12.7
32_1 67 years, male 12.4
414_1 84 years, female 9.4
149_1 88 years, male 8.8
466_1 57 years, female 8.7
413_1 59 years, female 8.2
491_1 89 years, female 5.6
490_1 67 years, female 4.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 261.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 261.3
FF:10030-101E3 24-65 years, mixed 261.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 76.3
Pig sample Sample description nTPM
Retina
nTPM: 76.3
Samples: 4

Max nTPM: 109.7
Min nTPM: 60.8
Sample A Female 64.5
Sample B Female 109.7
Sample C Male 60.8
Sample D Male 70.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 93.3
Mouse sample Sample description nTPM
Retina
nTPM: 93.4
Samples: 4

Max nTPM: 144.2
Min nTPM: 49.0
Sample A Male 113.0
Sample B Male 49.0
Sample C Female 67.2
Sample D Female 144.2

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by the Knut & Alice Wallenberg Foundation.