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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
759.5
nTPM
HPA Brain:
189.6
nTPM
GTEx:
759.5
nTPM
FANTOM5:
643.8
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
189.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 120.2
2586
Male, age 75, left hemisphere
172.9
2828
Female, age 72, unknown
145.5
1833
Male, age 53, unknown
137.5
1827
Male, age 72, unknown
129.8
1870
Female, age 42, unknown
126.6
1830
Male, age 51, unknown
116.8
2411
Female, age 72, unknown
112.6
2666
Male, age 74, left hemisphere
93.8
2019
Male, age 18, unknown
91.7
2219
Male, age 76, both hemispheres
75.2
Dorsal raphe nucleus nTPM: 171.4
2016
Female, age 72, unknown
204.7
1828
Male, age 53, unknown
200.1
2047
Male, age 72, unknown
174.1
2298
Female, age 72, unknown
144.9
2750
Male, age 76, both hemispheres
133.0
Inferior colliculus nTPM: 166.5
1848
Female, age 42, unknown
192.4
2097
Female, age 72, unknown
171.4
1890
Male, age 53, unknown
156.0
2849
Male, age 72, unknown
146.1
Median raphe nucleus nTPM: 147.0
2220
Male, age 76, midline
147.0
Periaquaductal grey, anterior nTPM: 138.8
1795
Male, age 51, unknown
146.7
2502
Female, age 75, unknown
145.5
1947
Male, age 18, unknown
124.1
Periaquaductal grey, dorsal nTPM: 176.4
2850
Male, age 76, both hemispheres
264.7
1840
Male, age 53, unknown
192.3
2464
Female, age 72, unknown
132.9
1831
Male, age 72, unknown
115.6
Periaquaductal grey, lateral nTPM: 189.6
2140
Male, age 76, both hemispheres
254.5
2053
Male, age 18, unknown
179.3
2272
Male, age 74, both hemispheres
135.0
Pretectal area nTPM: 148.7
2316
Male, age 76, right hemisphere
210.2
2273
Male, age 74, both hemispheres
202.6
2667
Female, age 75, unknown
173.5
1944
Female, age 72, unknown
172.4
2825
Male, age 18, unknown
149.7
1816
Male, age 51, unknown
145.5
1817
Female, age 42, unknown
144.4
2224
Female, age 72, unknown
137.4
1815
Male, age 53, unknown
112.9
2007
Male, age 72, unknown
95.3
2407
Male, age 75, both hemispheres
92.3
Red nucleus nTPM: 152.8
1821
Female, age 72, unknown
193.3
2227
Male, age 72, unknown
192.2
2769
Male, age 72, unknown
187.6
2823
Male, age 76, right hemisphere
179.6
1954
Female, age 42, unknown
177.7
2503
Female, age 72, unknown
164.6
2725
Female, age 75, unknown
161.1
1904
Male, age 53, unknown
139.5
1865
Male, age 51, unknown
131.3
2588
Male, age 74, left hemisphere
122.2
2785
Male, age 18, unknown
100.9
2584
Male, age 75, left hemisphere
84.2
Substantia nigra nTPM: 188.0
2699
Male, age 18, unknown
344.9
1916
Female, age 42, unknown
243.5
1851
Male, age 51, unknown
203.9
2409
Female, age 72, unknown
202.9
2241
Male, age 72, unknown
199.2
1889
Female, age 72, unknown
165.8
2590
Female, age 75, unknown
163.0
2665
Male, age 74, both hemispheres
126.8
1941
Male, age 53, unknown
121.9
2583
Male, age 75, right hemisphere
108.3
Superior colliculus nTPM: 135.7
1995
Male, age 72, unknown
158.6
1796
Male, age 53, unknown
152.8
2087
Female, age 72, unknown
151.4
2261
Male, age 18, unknown
142.3
1839
Male, age 51, unknown
140.8
2587
Male, age 74, left hemisphere
136.0
1913
Female, age 42, unknown
129.3
1895
Male, age 76, right hemisphere
120.0
2664
Male, age 75, both hemispheres
119.5
2668
Female, age 75, unknown
106.6
Ventral tegmental area nTPM: 163.4
2410
Female, age 72, unknown
194.6
2021
Male, age 53, unknown
186.6
2218
Male, age 76, both hemispheres
174.2
1915
Female, age 42, unknown
159.4
1942
Male, age 51, unknown
142.2
2223
Female, age 72, unknown
123.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
759.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 759.5
Samples: 139
Max nTPM: 2898.5
Min nTPM: 86.3
Std nTPM: 541.7
Median nTPM: 581.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2898.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2801.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2801.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2180.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2038.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1942.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1910.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1827.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1800.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1714.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1550.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1524.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1489.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1457.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1422.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1414.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1374.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1357.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1320.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1286.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1265.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1249.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1240.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1231.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1199.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1180.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1177.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1121.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1110.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1069.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1057.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1037.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
971.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
967.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
959.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
958.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
931.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
923.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
916.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
894.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
887.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
884.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
879.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
872.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
870.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
866.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
842.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
839.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
812.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
790.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
787.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
774.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
746.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
704.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
698.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
696.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
695.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
690.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
666.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
647.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
638.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
632.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
629.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
625.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
623.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
623.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
617.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
604.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
602.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
581.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
580.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
579.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
578.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
563.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
562.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
551.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
545.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
542.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
541.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
537.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
537.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
536.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
532.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
531.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
527.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
517.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
512.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
512.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
493.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
471.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
469.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
459.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
458.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
454.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
436.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
434.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
431.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
429.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
428.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
417.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
415.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
413.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
410.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
408.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
404.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
402.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
395.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
385.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
378.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
375.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
373.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
354.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
351.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
338.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
337.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
336.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
330.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
325.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
304.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
303.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
297.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
270.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
266.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
264.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
260.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
260.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
255.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
196.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
189.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
187.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
177.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
176.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
168.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
165.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
133.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
105.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
96.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
89.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
86.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.