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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
683.9
Sample id
Sample description
nTPM
Amygdala nTPM: 438.2
2814
Male, age 76, right hemisphere
656.1
2517
Female, age 94, left hemisphere
549.7
1987
Female, age 91, left hemisphere
467.4
2514
Male, age 75, right hemisphere
304.3
2695
Female, age 67, right hemisphere
213.6
Basal amygdala nTPM: 666.8
2243
Female, age 91, right hemisphere
1119.1
2110
Male, age 80, left hemisphere
886.5
2685
Female, age 94, left hemisphere
804.0
1955
Male, age 76, both hemispheres
555.3
2827
Female, age 67, right hemisphere
358.3
2609
Male, age 75, right hemisphere
277.4
Central amygdala nTPM: 457.4
2239
Male, age 80, left hemisphere
699.1
1905
Male, age 76, both hemispheres
567.8
2826
Female, age 94, left hemisphere
472.7
2701
Female, age 91, right hemisphere
365.9
2515
Male, age 75, right hemisphere
181.2
Corticomedial amygdala nTPM: 683.9
2829
Male, age 80, left hemisphere
984.3
2429
Female, age 94, left hemisphere
841.8
2242
Female, age 91, right hemisphere
810.0
2535
Female, age 67, right hemisphere
627.2
2240
Male, age 76, both hemispheres
556.0
2428
Male, age 75, right hemisphere
283.9
Lateral amygdala nTPM: 472.2
2534
Female, age 94, left hemisphere
861.4
1883
Male, age 76, both hemispheres
741.1
2256
Male, age 80, left hemisphere
450.5
2255
Female, age 91, right hemisphere
411.4
2516
Male, age 75, right hemisphere
190.0
2830
Female, age 67, right hemisphere
179.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
845.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 845.4
Samples: 181
Max nTPM: 2436.4
Min nTPM: 82.0
Std nTPM: 526.0
Median nTPM: 749.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2436.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
2393.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
2278.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
2198.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
2111.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1989.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1881.5
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
1840.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
1764.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1761.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1715.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
1697.4
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
1691.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
1675.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
1669.0
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
1667.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
1666.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
1664.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
1644.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1635.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
1612.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1611.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
1603.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1548.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1535.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
1523.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1467.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
1411.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
1394.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
1377.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1356.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
1344.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1335.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
1312.4
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
1288.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
1282.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
1278.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1274.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
1254.6
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1230.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
1230.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
1225.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
1221.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
1213.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
1205.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
1197.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
1196.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1178.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
1171.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
1171.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1144.9
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
1141.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
1097.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
1097.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1097.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1087.6
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
1048.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
1039.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
1036.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
1035.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
997.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
990.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
949.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
948.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
945.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
932.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
927.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
927.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
922.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
919.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
908.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
899.4
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
894.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
889.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
887.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
862.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
859.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
857.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
847.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
821.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
815.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
812.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
805.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
802.8
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
800.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
795.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
785.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
784.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
784.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
774.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
749.1
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
726.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
726.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
724.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
724.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
722.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
700.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
697.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
691.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
690.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
680.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
680.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
658.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
650.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
650.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
642.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
632.8
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
626.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
618.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
615.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
614.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
611.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
611.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
598.8
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
588.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
580.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
580.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
557.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
554.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
527.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
517.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
517.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
503.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
495.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
474.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
468.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
454.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
451.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
440.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
437.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
437.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
428.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
421.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
406.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
399.0
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
377.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
377.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
372.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
372.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
371.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
367.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
362.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
357.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
354.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
352.7
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
351.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
351.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
348.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
343.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
338.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
332.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
325.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
306.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
302.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
296.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
296.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
296.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
288.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
283.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
278.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
273.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
267.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
253.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
251.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
245.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
231.9
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
222.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
218.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
213.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
184.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
173.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
173.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
162.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
157.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
154.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
152.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
148.2
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
123.7
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
113.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
108.5
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
82.0
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
602.7
Pig sample
Sample description
nTPM
Amygdala nTPM: 602.8
Samples: 4
Max nTPM: 995.9
Min nTPM: 417.6
Sample A
Female
995.9
Sample B
Female
417.6
Sample C
Male
446.4
Sample D
Male
551.1
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2008.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 2008.9
Samples: 4
Max nTPM: 2253.3
Min nTPM: 1788.9
Sample A
Male
1945.0
Sample B
Male
2048.2
Sample C
Female
2253.3
Sample D
Female
1788.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
