MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:398.2 nTPM
HPA Brain:402.2 nTPM
GTEx:398.2 nTPM
FANTOM5:37.3 Scaled Tags Per Million
Pig:921.6 nTPM
Mouse:2132.8 nTPM
Allen mouse:26.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 402.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 302.6
2219 Male, age 76, both hemispheres 561.2
2019 Male, age 18, unknown 388.1
1827 Male, age 72, unknown 380.1
2411 Female, age 72, unknown 327.7
2828 Female, age 72, unknown 254.4
1833 Male, age 53, unknown 246.9
1830 Male, age 51, unknown 234.6
2666 Male, age 74, left hemisphere 220.8
1870 Female, age 42, unknown 217.4
2586 Male, age 75, left hemisphere 194.4
Dorsal raphe nucleus
nTPM: 241.2
2298 Female, age 72, unknown 318.3
1828 Male, age 53, unknown 272.7
2750 Male, age 76, both hemispheres 243.6
2047 Male, age 72, unknown 200.7
2016 Female, age 72, unknown 170.5
Inferior colliculus
nTPM: 391.1
2097 Female, age 72, unknown 545.4
1848 Female, age 42, unknown 398.2
1890 Male, age 53, unknown 313.4
2849 Male, age 72, unknown 307.2
Median raphe nucleus
nTPM: 279.8
2220 Male, age 76, midline 279.8
Periaquaductal grey, anterior
nTPM: 300.7
2502 Female, age 75, unknown 347.4
1947 Male, age 18, unknown 305.1
1795 Male, age 51, unknown 249.4
Periaquaductal grey, dorsal
nTPM: 215.0
2464 Female, age 72, unknown 243.1
1831 Male, age 72, unknown 230.2
1840 Male, age 53, unknown 196.6
2850 Male, age 76, both hemispheres 190.1
Periaquaductal grey, lateral
nTPM: 168.9
2140 Male, age 76, both hemispheres 171.9
2272 Male, age 74, both hemispheres 167.6
2053 Male, age 18, unknown 167.3
Pretectal area
nTPM: 378.2
1817 Female, age 42, unknown 589.6
1944 Female, age 72, unknown 580.2
2007 Male, age 72, unknown 577.2
1816 Male, age 51, unknown 568.9
1815 Male, age 53, unknown 433.7
2667 Female, age 75, unknown 342.5
2224 Female, age 72, unknown 257.8
2316 Male, age 76, right hemisphere 238.1
2407 Male, age 75, both hemispheres 226.6
2825 Male, age 18, unknown 207.9
2273 Male, age 74, both hemispheres 137.7
Red nucleus
nTPM: 269.3
1821 Female, age 72, unknown 413.1
2785 Male, age 18, unknown 380.2
1954 Female, age 42, unknown 321.3
2823 Male, age 76, right hemisphere 300.1
2584 Male, age 75, left hemisphere 282.4
1865 Male, age 51, unknown 255.0
2227 Male, age 72, unknown 246.3
2769 Male, age 72, unknown 244.2
2503 Female, age 72, unknown 227.0
1904 Male, age 53, unknown 212.6
2725 Female, age 75, unknown 203.9
2588 Male, age 74, left hemisphere 145.1
Substantia nigra
nTPM: 402.2
1941 Male, age 53, unknown 788.4
1889 Female, age 72, unknown 566.0
1916 Female, age 42, unknown 527.7
2665 Male, age 74, both hemispheres 389.7
2409 Female, age 72, unknown 367.6
2241 Male, age 72, unknown 367.3
1851 Male, age 51, unknown 352.1
2699 Male, age 18, unknown 261.6
2590 Female, age 75, unknown 216.5
2583 Male, age 75, right hemisphere 185.2
Superior colliculus
nTPM: 317.4
2668 Female, age 75, unknown 532.7
1895 Male, age 76, right hemisphere 482.4
2087 Female, age 72, unknown 477.1
2261 Male, age 18, unknown 331.2
1796 Male, age 53, unknown 322.5
1839 Male, age 51, unknown 285.4
1913 Female, age 42, unknown 223.1
1995 Male, age 72, unknown 194.5
2664 Male, age 75, both hemispheres 165.7
2587 Male, age 74, left hemisphere 159.3
Ventral tegmental area
nTPM: 330.7
2218 Male, age 76, both hemispheres 495.7
2410 Female, age 72, unknown 433.1
1915 Female, age 42, unknown 349.2
1942 Male, age 51, unknown 292.4
2223 Female, age 72, unknown 249.5
2021 Male, age 53, unknown 164.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 398.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 398.2
Samples: 183

Max nTPM: 4358.9
Min nTPM: 8.2
Std nTPM: 519.5
Median nTPM: 223.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4358.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2930.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2293.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 1825.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1420.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1419.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 1348.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1318.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 1231.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 1202.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1177.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.3
FF:10158-103A5 76 years, female 37.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 921.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 497.4
Samples: 4

Max nTPM: 791.4
Min nTPM: 182.4
Sample A Female 791.4
Sample B Female 342.7
Sample C Male 673.0
Sample D Male 182.4
Midbrain
nTPM: 700.0
Samples: 4

Max nTPM: 1053.5
Min nTPM: 283.0
Sample A Female 283.0
Sample B Female 412.7
Sample C Male 1050.6
Sample D Male 1053.5
Periaqueductal gray
nTPM: 388.0
Samples: 3

Max nTPM: 453.4
Min nTPM: 329.3
Sample B Female 381.4
Sample C Male 453.4
Sample D Male 329.3
Superior colliculi
nTPM: 921.6
Samples: 4

Max nTPM: 1286.6
Min nTPM: 428.7
Sample A Female 1061.8
Sample B Female 428.7
Sample C Male 1286.6
Sample D Male 909.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2132.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 2132.8
Samples: 4

Max nTPM: 2229.8
Min nTPM: 2040.9
Sample A Male 2095.8
Sample B Male 2229.8
Sample C Female 2164.7
Sample D Female 2040.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 26.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 26.4
70919418 Antisense, RP_050713_01_C08, Mouse strain C57BL/6J (56 days, male) 26.4

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