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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:157.0 nTPM
HPA Brain:424.1 nTPM
GTEx:157.0 nTPM
FANTOM5:318.5 Scaled Tags Per Million
Pig:328.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 295.0
1981 Female, age 72, midline 397.0
2194 Female, age 79, both hemispheres 379.8
2048 Male, age 55, midline 334.9
2816 Male, age 47, midline 271.7
2565 Male, age 75, midline 91.8
Cervical spinal cord, dorsal horn
nTPM: 424.1
2297 Male, age 75, both hemispheres 765.9
2721 Male, age 90, both hemispheres 613.0
2173 Female, age 72, unknown 403.1
1877 Male, age 55, unknown 378.1
2069 Male, age 47, both hemispheres 334.6
2296 Male, age 66, both hemispheres 49.8
Cervical spinal cord, ventral horn
nTPM: 270.5
2068 Male, age 55, unknown 507.4
2820 Female, age 79, both hemispheres 371.6
2098 Female, age 72, unknown 232.6
2480 Male, age 75, both hemispheres 196.8
2295 Male, age 66, both hemispheres 188.4
2809 Male, age 90, both hemispheres 126.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.0
Samples: 204

Max nTPM: 1674.1
Min nTPM: 4.3
Std nTPM: 220.2
Median nTPM: 86.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1674.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1611.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1075.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 789.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 696.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 684.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 609.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 601.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 547.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 543.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 519.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 499.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 457.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 442.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 436.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 422.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 400.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 390.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 384.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 371.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 368.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 343.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 334.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 326.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 326.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 323.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 319.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 313.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 313.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 306.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 303.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 289.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 289.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 285.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 282.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 276.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 261.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 252.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 245.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 245.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 243.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 239.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 232.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 230.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 225.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 223.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 213.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 213.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 210.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 209.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 205.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 203.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 199.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 199.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 197.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 196.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 190.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 187.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 183.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 182.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 177.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 177.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 168.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 166.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 163.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 159.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 156.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 155.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 153.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 152.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 150.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 149.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 143.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 142.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 140.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 137.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 137.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 127.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 126.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 122.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 121.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 120.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 113.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 112.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 109.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 108.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 108.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 107.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 107.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 107.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 104.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 103.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 103.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 103.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 100.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 98.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 98.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 92.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 90.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 88.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 88.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 85.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 80.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 76.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 75.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 73.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 73.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 73.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 72.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 71.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 68.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 68.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 66.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 64.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 63.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 63.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 60.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 60.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 59.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 58.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 58.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 55.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 54.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 54.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 53.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 52.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 52.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 50.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 50.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 50.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 49.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 49.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 47.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 47.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 47.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 46.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 43.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 42.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 41.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 40.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 39.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 39.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 39.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 38.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 36.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 31.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 30.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 30.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 29.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 29.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 27.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 27.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 24.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 24.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 22.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 21.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 21.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 21.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 20.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 19.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 17.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 17.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 17.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 17.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 17.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 17.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 16.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 16.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 15.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 15.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 15.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 14.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 14.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 14.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 13.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 12.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 12.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 12.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 12.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 10.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 10.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 10.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 10.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 9.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 9.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 9.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 8.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 8.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 8.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 8.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 8.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 8.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 8.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 7.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 7.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 7.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 7.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 7.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 7.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 6.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 6.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 5.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 4.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

318.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 318.5
FF:10181-103D1 60 years, female 522.5
FF:10159-103A6 76 years, female 114.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 328.4
Samples: 4

Max nTPM: 631.2
Min nTPM: 44.2
Sample A Female 631.2
Sample B Female 135.5
Sample C Male 44.2
Sample D Male 502.5
Ventral spinal cord
nTPM: 313.8
Samples: 4

Max nTPM: 367.6
Min nTPM: 171.7
Sample A Female 367.6
Sample B Female 358.7
Sample C Male 357.1
Sample D Male 171.7

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