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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1267.2 nTPM
HPA Brain:714.3 nTPM
GTEx:1267.2 nTPM
FANTOM5:1119.9 Scaled Tags Per Million
Pig:797.1 nTPM
Mouse:2722.6 nTPM
Allen mouse:21.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

714.3
Sample id Sample description nTPM
Amygdala
nTPM: 714.3
2814 Male, age 76, right hemisphere 982.3
2514 Male, age 75, right hemisphere 760.9
2695 Female, age 67, right hemisphere 644.6
1987 Female, age 91, left hemisphere 594.6
2517 Female, age 94, left hemisphere 589.4
Basal amygdala
nTPM: 586.6
1955 Male, age 76, both hemispheres 709.0
2110 Male, age 80, left hemisphere 701.1
2609 Male, age 75, right hemisphere 623.7
2243 Female, age 91, right hemisphere 539.9
2685 Female, age 94, left hemisphere 526.7
2827 Female, age 67, right hemisphere 418.9
Central amygdala
nTPM: 623.7
1905 Male, age 76, both hemispheres 835.5
2826 Female, age 94, left hemisphere 602.7
2239 Male, age 80, left hemisphere 592.6
2515 Male, age 75, right hemisphere 550.9
2701 Female, age 91, right hemisphere 537.0
Corticomedial amygdala
nTPM: 599.0
2829 Male, age 80, left hemisphere 704.0
2240 Male, age 76, both hemispheres 659.7
2428 Male, age 75, right hemisphere 655.0
2429 Female, age 94, left hemisphere 654.9
2242 Female, age 91, right hemisphere 508.1
2535 Female, age 67, right hemisphere 412.1
Lateral amygdala
nTPM: 567.3
1883 Male, age 76, both hemispheres 859.7
2516 Male, age 75, right hemisphere 650.4
2534 Female, age 94, left hemisphere 594.0
2830 Female, age 67, right hemisphere 461.9
2256 Male, age 80, left hemisphere 454.8
2255 Female, age 91, right hemisphere 383.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1267.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1267.2
Samples: 181

Max nTPM: 3428.4
Min nTPM: 255.3
Std nTPM: 396.6
Median nTPM: 1225.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3428.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2715.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2672.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2523.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2386.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2273.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2238.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1997.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1971.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1960.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1846.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1789.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1773.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1757.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1742.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1736.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1726.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1694.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1687.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1683.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1668.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1666.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1662.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1621.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1588.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1579.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1569.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1568.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1553.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1545.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1531.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1531.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1521.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1519.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1511.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1499.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1497.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1478.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1467.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1462.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1439.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1431.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1429.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1423.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1414.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1411.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1401.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1397.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1394.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1391.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1380.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1371.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1368.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1349.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1348.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1344.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1341.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1340.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1338.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1330.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1327.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1315.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1314.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1307.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1300.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1298.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1292.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1292.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1291.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1291.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1290.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1289.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1288.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1281.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1278.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1272.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1269.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1268.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1268.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1267.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1265.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1264.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1262.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1261.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1258.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1255.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1254.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1244.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1243.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1238.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1225.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1223.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1212.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1208.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1206.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1195.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1190.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1186.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1185.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1184.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1184.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1182.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1180.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1173.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1170.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1158.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1156.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1145.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1143.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1138.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1134.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1133.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1121.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1118.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1105.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1102.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1095.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1091.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1087.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1085.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1080.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1074.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1071.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1062.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1061.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1061.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1060.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1057.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1056.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1055.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1052.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1051.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1044.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1038.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1038.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1038.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1034.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1013.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1007.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1006.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 997.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 990.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 987.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 977.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 974.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 971.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 967.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 965.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 955.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 952.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 946.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 927.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 916.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 908.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 907.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 901.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 886.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 883.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 877.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 874.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 872.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 866.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 866.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 865.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 855.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 852.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 848.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 847.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 842.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 825.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 823.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 821.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 799.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 798.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 797.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 779.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 775.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 724.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 694.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 452.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 255.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1119.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1119.9
FF:10151-102I7 76 years, female 1119.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

797.1
Pig sample Sample description nTPM
Amygdala
nTPM: 797.1
Samples: 4

Max nTPM: 1191.7
Min nTPM: 597.1
Sample A Female 1191.7
Sample B Female 758.7
Sample C Male 597.1
Sample D Male 640.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2722.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 2722.6
Samples: 4

Max nTPM: 2895.7
Min nTPM: 2561.8
Sample A Male 2639.1
Sample B Male 2895.7
Sample C Female 2793.9
Sample D Female 2561.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.9
183 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 21.9
182 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 21.5

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