On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1156.5
nTPM
HPA Brain:
753.3
nTPM
GTEx:
1156.5
nTPM
FANTOM5:
1158.3
Scaled Tags Per Million
Macaque:
2.8
nTPM
Mouse:
611.4
nTPM
Rat:
496.5
nTPM
Pig:
1067.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
753.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 592.2
2019
Male, age 18, unknown
817.3
1870
Female, age 42, unknown
704.9
2411
Female, age 72, unknown
699.9
1827
Male, age 72, unknown
661.4
1833
Male, age 53, unknown
572.1
1830
Male, age 51, unknown
538.8
2828
Female, age 72, unknown
519.3
2219
Male, age 76, both hemispheres
491.5
2666
Male, age 74, left hemisphere
485.6
2586
Male, age 75, left hemisphere
431.4
Dorsal raphe nucleus nTPM: 594.6
2298
Female, age 72, unknown
674.1
2750
Male, age 76, both hemispheres
657.3
1828
Male, age 53, unknown
603.5
2047
Male, age 72, unknown
547.6
2016
Female, age 72, unknown
490.7
Inferior colliculus nTPM: 570.3
2097
Female, age 72, unknown
710.0
1848
Female, age 42, unknown
550.6
1890
Male, age 53, unknown
548.1
2849
Male, age 72, unknown
472.5
Median raphe nucleus nTPM: 573.0
2220
Male, age 76, midline
573.0
Periaquaductal grey, anterior nTPM: 641.0
1947
Male, age 18, unknown
664.9
2502
Female, age 75, unknown
655.8
1795
Male, age 51, unknown
602.2
Periaquaductal grey, dorsal nTPM: 534.6
1831
Male, age 72, unknown
543.9
2464
Female, age 72, unknown
543.8
1840
Male, age 53, unknown
531.4
2850
Male, age 76, both hemispheres
519.3
Periaquaductal grey, lateral nTPM: 545.0
2053
Male, age 18, unknown
592.8
2272
Male, age 74, both hemispheres
568.5
2140
Male, age 76, both hemispheres
473.8
Pretectal area nTPM: 753.3
1944
Female, age 72, unknown
1024.2
2007
Male, age 72, unknown
974.7
1817
Female, age 42, unknown
947.1
1816
Male, age 51, unknown
935.9
1815
Male, age 53, unknown
834.4
2667
Female, age 75, unknown
710.6
2224
Female, age 72, unknown
642.6
2273
Male, age 74, both hemispheres
623.6
2825
Male, age 18, unknown
537.0
2316
Male, age 76, right hemisphere
534.4
2407
Male, age 75, both hemispheres
522.1
Red nucleus nTPM: 646.4
1821
Female, age 72, unknown
856.0
2785
Male, age 18, unknown
760.5
1865
Male, age 51, unknown
694.6
2725
Female, age 75, unknown
671.3
2823
Male, age 76, right hemisphere
668.4
1954
Female, age 42, unknown
666.7
2503
Female, age 72, unknown
642.5
1904
Male, age 53, unknown
626.0
2588
Male, age 74, left hemisphere
552.0
2769
Male, age 72, unknown
543.3
2584
Male, age 75, left hemisphere
539.5
2227
Male, age 72, unknown
535.6
Substantia nigra nTPM: 635.0
1889
Female, age 72, unknown
829.3
2241
Male, age 72, unknown
753.2
2590
Female, age 75, unknown
664.2
1941
Male, age 53, unknown
657.5
1916
Female, age 42, unknown
656.2
1851
Male, age 51, unknown
640.0
2409
Female, age 72, unknown
620.0
2583
Male, age 75, right hemisphere
585.2
2665
Male, age 74, both hemispheres
539.9
2699
Male, age 18, unknown
404.8
Superior colliculus nTPM: 629.3
2087
Female, age 72, unknown
763.3
1913
Female, age 42, unknown
728.8
2587
Male, age 74, left hemisphere
717.7
2261
Male, age 18, unknown
688.6
1895
Male, age 76, right hemisphere
669.3
1995
Male, age 72, unknown
604.7
1796
Male, age 53, unknown
578.5
2668
Female, age 75, unknown
559.8
1839
Male, age 51, unknown
524.9
2664
Male, age 75, both hemispheres
457.6
Ventral tegmental area nTPM: 561.8
2410
Female, age 72, unknown
647.7
2223
Female, age 72, unknown
563.6
1915
Female, age 42, unknown
549.4
2218
Male, age 76, both hemispheres
548.3
1942
Male, age 51, unknown
534.5
2021
Male, age 53, unknown
527.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1156.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1156.5
Samples: 183
Max nTPM: 2040.5
Min nTPM: 426.2
Std nTPM: 234.3
Median nTPM: 1136.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2040.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1938.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1782.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1740.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1724.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1654.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1629.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1613.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1596.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1547.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1510.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1481.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1455.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1452.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1447.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1442.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1441.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1421.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1415.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1409.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1407.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1404.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1401.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1399.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1397.2
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1397.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1376.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1368.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1365.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1355.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1355.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1354.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1351.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1348.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1343.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1342.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1331.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1330.8
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1320.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1318.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1316.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1307.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1305.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1301.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1297.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1292.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1285.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1282.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1282.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1280.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1271.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1259.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1259.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1254.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1250.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1250.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1241.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1239.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1237.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1236.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1234.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1227.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1221.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1216.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1210.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1209.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1203.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1199.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1198.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1196.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1183.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1180.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1179.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1171.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1168.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1166.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1165.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1162.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1154.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1153.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1151.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1150.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1149.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1146.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1145.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1144.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1144.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1143.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1142.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1142.3
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1141.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1136.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1136.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1129.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1122.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1121.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1121.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1120.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1120.6
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1117.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1111.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1110.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1104.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1104.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1103.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1102.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1099.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1097.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1096.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1096.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1095.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1094.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1092.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1090.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1090.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1089.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1087.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1087.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1084.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1083.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1082.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1081.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1078.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1077.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1075.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1070.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1068.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1064.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1063.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1052.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1050.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1047.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1045.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1039.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1033.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1028.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1020.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1017.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1017.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1015.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1014.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1005.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1005.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1003.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
993.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
987.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
987.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
984.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
984.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
983.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
977.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
974.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
965.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
964.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
958.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
958.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
956.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
955.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
938.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
933.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
929.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
924.2
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
923.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
921.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
906.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
897.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
895.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
888.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
878.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
858.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
841.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
829.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
829.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
805.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
804.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
801.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
748.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
666.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
661.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
655.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
606.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
464.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
426.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 2.8
Samples: 1
Max nTPM: 2.8
Min nTPM: 2.8
Sample A
2.8
Midbrain nTPM: 0.5
Samples: 1
Max nTPM: 0.5
Min nTPM: 0.5
Sample A
0.5
Superior colliculi nTPM: 1.0
Samples: 1
Max nTPM: 1.0
Min nTPM: 1.0
Sample A
1.0
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1067.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 944.2
Samples: 3
Max nTPM: 1265.3
Min nTPM: 747.5
Sample A
Female
1265.3
Sample B
Female
747.5
Sample C
Male
819.7
Midbrain nTPM: 1067.0
Samples: 3
Max nTPM: 1355.2
Min nTPM: 870.6
Sample B
Female
870.6
Sample C
Male
1355.2
Sample D
Male
975.3
Periaqueductal gray nTPM: 667.5
Samples: 3
Max nTPM: 776.0
Min nTPM: 599.6
Sample B
Female
627.0
Sample C
Male
776.0
Sample D
Male
599.6
Superior colliculi nTPM: 1038.8
Samples: 4
Max nTPM: 1314.7
Min nTPM: 797.5
Sample A
Female
1164.5
Sample B
Female
797.5
Sample C
Male
1314.7
Sample D
Male
878.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
611.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 611.4
Samples: 4
Max nTPM: 625.4
Min nTPM: 597.9
Sample A
613.6
Sample B
608.6
Sample C
597.9
Sample D
625.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
496.5
Rat sample
Sample description
nTPM
Midbrain nTPM: 496.5
Samples: 4
Max nTPM: 503.8
Min nTPM: 486.3
Sample A
497.9
Sample A
498.1
Sample A
503.8
Sample A
486.3
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The Human Protein Atlas project is funded
