MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1156.5 nTPM
HPA Brain:750.9 nTPM
GTEx:1156.5 nTPM
FANTOM5:1158.3 Scaled Tags Per Million
Pig:1033.3 nTPM
Mouse:1701.0 nTPM
Allen mouse:15.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 750.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 590.3
2019 Male, age 18, unknown 814.9
1870 Female, age 42, unknown 702.8
2411 Female, age 72, unknown 697.9
1827 Male, age 72, unknown 659.3
1833 Male, age 53, unknown 570.3
1830 Male, age 51, unknown 537.1
2828 Female, age 72, unknown 517.6
2219 Male, age 76, both hemispheres 491.7
2666 Male, age 74, left hemisphere 484.0
2586 Male, age 75, left hemisphere 427.9
Dorsal raphe nucleus
nTPM: 593.1
2298 Female, age 72, unknown 671.8
2750 Male, age 76, both hemispheres 657.6
1828 Male, age 53, unknown 601.5
2047 Male, age 72, unknown 546.1
2016 Female, age 72, unknown 488.8
Inferior colliculus
nTPM: 568.4
2097 Female, age 72, unknown 707.7
1848 Female, age 42, unknown 548.7
1890 Male, age 53, unknown 546.4
2849 Male, age 72, unknown 470.9
Median raphe nucleus
nTPM: 573.3
2220 Male, age 76, midline 573.3
Periaquaductal grey, anterior
nTPM: 638.8
1947 Male, age 18, unknown 662.8
2502 Female, age 75, unknown 653.4
1795 Male, age 51, unknown 600.0
Periaquaductal grey, dorsal
nTPM: 533.4
2464 Female, age 72, unknown 542.2
1831 Male, age 72, unknown 542.1
1840 Male, age 53, unknown 529.8
2850 Male, age 76, both hemispheres 519.3
Periaquaductal grey, lateral
nTPM: 543.7
2053 Male, age 18, unknown 590.8
2272 Male, age 74, both hemispheres 566.6
2140 Male, age 76, both hemispheres 473.9
Pretectal area
nTPM: 750.9
1944 Female, age 72, unknown 1021.2
2007 Male, age 72, unknown 971.4
1817 Female, age 42, unknown 943.9
1816 Male, age 51, unknown 933.3
1815 Male, age 53, unknown 832.3
2667 Female, age 75, unknown 708.3
2224 Female, age 72, unknown 640.4
2273 Male, age 74, both hemispheres 621.5
2825 Male, age 18, unknown 535.3
2316 Male, age 76, right hemisphere 534.6
2407 Male, age 75, both hemispheres 517.7
Red nucleus
nTPM: 644.2
1821 Female, age 72, unknown 853.4
2785 Male, age 18, unknown 757.9
1865 Male, age 51, unknown 692.2
2725 Female, age 75, unknown 668.8
2823 Male, age 76, right hemisphere 668.5
1954 Female, age 42, unknown 664.3
2503 Female, age 72, unknown 640.9
1904 Male, age 53, unknown 623.6
2588 Male, age 74, left hemisphere 550.6
2769 Male, age 72, unknown 541.5
2584 Male, age 75, left hemisphere 535.0
2227 Male, age 72, unknown 534.0
Substantia nigra
nTPM: 632.7
1889 Female, age 72, unknown 826.4
2241 Male, age 72, unknown 751.1
2590 Female, age 75, unknown 662.1
1941 Male, age 53, unknown 655.6
1916 Female, age 42, unknown 653.4
1851 Male, age 51, unknown 637.8
2409 Female, age 72, unknown 618.4
2583 Male, age 75, right hemisphere 580.7
2665 Male, age 74, both hemispheres 538.1
2699 Male, age 18, unknown 403.3
Superior colliculus
nTPM: 627.2
2087 Female, age 72, unknown 760.8
1913 Female, age 42, unknown 725.9
2587 Male, age 74, left hemisphere 715.4
2261 Male, age 18, unknown 686.3
1895 Male, age 76, right hemisphere 669.7
1995 Male, age 72, unknown 602.7
1796 Male, age 53, unknown 576.7
2668 Female, age 75, unknown 557.7
1839 Male, age 51, unknown 523.1
2664 Male, age 75, both hemispheres 453.6
Ventral tegmental area
nTPM: 560.3
2410 Female, age 72, unknown 645.5
2223 Female, age 72, unknown 561.7
2218 Male, age 76, both hemispheres 548.7
1915 Female, age 42, unknown 547.5
1942 Male, age 51, unknown 532.7
2021 Male, age 53, unknown 525.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1156.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1156.5
Samples: 183

Max nTPM: 2040.5
Min nTPM: 426.2
Std nTPM: 234.3
Median nTPM: 1136.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2040.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1938.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1782.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1740.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1724.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 1654.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1629.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1613.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1596.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1547.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1510.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1158.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1158.3
FF:10158-103A5 76 years, female 1158.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1033.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 815.6
Samples: 4

Max nTPM: 1257.5
Min nTPM: 443.5
Sample A Female 1257.5
Sample B Female 744.9
Sample C Male 816.4
Sample D Male 443.5
Midbrain
nTPM: 972.2
Samples: 4

Max nTPM: 1351.1
Min nTPM: 696.9
Sample A Female 696.9
Sample B Female 867.2
Sample C Male 1351.1
Sample D Male 973.6
Periaqueductal gray
nTPM: 665.9
Samples: 3

Max nTPM: 773.9
Min nTPM: 598.5
Sample B Female 625.2
Sample C Male 773.9
Sample D Male 598.5
Superior colliculi
nTPM: 1033.3
Samples: 4

Max nTPM: 1308.4
Min nTPM: 793.9
Sample A Female 1156.7
Sample B Female 793.9
Sample C Male 1308.4
Sample D Male 874.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1701.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1701.0
Samples: 4

Max nTPM: 1731.5
Min nTPM: 1663.0
Sample A Male 1717.4
Sample B Male 1731.5
Sample C Female 1691.9
Sample D Female 1663.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
182 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 15.4
183 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 14.6

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