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  • RPL7A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:911.1 nTPM
HPA Brain:233.0 nTPM
GTEx:911.1 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:539.1 nTPM
Allen mouse:18.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.0
Sample id Sample description nTPM
Amygdala
nTPM: 233.0
2695 Female, age 67, right hemisphere 278.7
2514 Male, age 75, right hemisphere 257.5
2517 Female, age 94, left hemisphere 228.9
1987 Female, age 91, left hemisphere 212.6
2814 Male, age 76, right hemisphere 187.1
Basal amygdala
nTPM: 209.3
2827 Female, age 67, right hemisphere 265.9
2609 Male, age 75, right hemisphere 239.9
2110 Male, age 80, left hemisphere 210.1
2685 Female, age 94, left hemisphere 190.5
2243 Female, age 91, right hemisphere 189.2
1955 Male, age 76, both hemispheres 160.2
Central amygdala
nTPM: 218.5
2826 Female, age 94, left hemisphere 321.5
2515 Male, age 75, right hemisphere 253.8
2239 Male, age 80, left hemisphere 186.8
2701 Female, age 91, right hemisphere 168.8
1905 Male, age 76, both hemispheres 161.5
Corticomedial amygdala
nTPM: 202.4
2428 Male, age 75, right hemisphere 249.2
2535 Female, age 67, right hemisphere 226.5
2829 Male, age 80, left hemisphere 209.8
2242 Female, age 91, right hemisphere 207.9
2429 Female, age 94, left hemisphere 167.6
2240 Male, age 76, both hemispheres 153.3
Lateral amygdala
nTPM: 227.3
2830 Female, age 67, right hemisphere 299.6
2534 Female, age 94, left hemisphere 252.4
2516 Male, age 75, right hemisphere 248.9
2256 Male, age 80, left hemisphere 205.1
2255 Female, age 91, right hemisphere 179.1
1883 Male, age 76, both hemispheres 179.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

911.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 911.1
Samples: 181

Max nTPM: 2604.6
Min nTPM: 540.6
Std nTPM: 270.8
Median nTPM: 860.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2604.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1935.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1838.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1729.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1702.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1648.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1589.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1540.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1473.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1437.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1375.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1327.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1326.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1322.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1312.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1296.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1235.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1163.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1160.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1154.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1142.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1129.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1111.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1096.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1076.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1076.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1064.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1057.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1051.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1050.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1049.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1049.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1045.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1041.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1041.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1033.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1031.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1030.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1028.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1010.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1004.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 998.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 997.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 995.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 992.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 990.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 984.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 984.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 980.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 974.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 971.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 967.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 965.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 964.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 958.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 957.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 957.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 949.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 944.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 943.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 938.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 936.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 934.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 927.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 924.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 922.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 922.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 921.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 919.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 918.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 910.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 899.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 896.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 891.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 891.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 889.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 887.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 884.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 884.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 881.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 881.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 880.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 879.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 877.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 874.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 870.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 868.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 866.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 865.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 865.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 860.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 859.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 856.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 852.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 852.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 846.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 841.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 840.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 840.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 835.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 832.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 828.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 827.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 827.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 824.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 822.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 820.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 818.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 816.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 815.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 811.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 807.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 807.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 806.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 805.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 803.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 802.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 801.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 799.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 792.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 789.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 786.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 784.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 777.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 776.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 772.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 766.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 759.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 757.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 753.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 751.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 748.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 747.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 745.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 744.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 743.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 743.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 731.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 730.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 722.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 718.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 718.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 716.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 715.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 715.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 709.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 708.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 706.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 704.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 703.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 703.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 703.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 702.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 700.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 699.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 697.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 696.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 694.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 690.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 688.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 687.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 663.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 657.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 654.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 654.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 647.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 644.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 640.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 640.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 637.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 637.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 632.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 631.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 629.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 623.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 599.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 588.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 586.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 581.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 578.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 540.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 36.2
FF:10151-102I7 76 years, female 36.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.8
Pig sample Sample description nTPM
Amygdala
nTPM: 4.8
Samples: 4

Max nTPM: 7.3
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 7.3
Sample C Male 5.2
Sample D Male 4.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 539.2
Samples: 4

Max nTPM: 550.4
Min nTPM: 526.1
Sample A Male 526.1
Sample B Male 550.4
Sample C Female 533.7
Sample D Female 546.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.3
81600152 Antisense, RP_080320_03_A06, Mouse strain C57BL/6J (56 days, male) 18.6
69818332 Antisense, RP_050510_04_H05, Mouse strain C57BL/6J (56 days, male) 18.0

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